RetrogeneDB ID: | retro_btau_478 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 12:74118088..74118595(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SYF2 | ||
Ensembl ID: | ENSBTAG00000001651 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.04 % |
Parental protein coverage: | 71.91 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VGGAEEQQPPAGAEELASQKREQRLRKFRELHLKRNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWEL |
VGGAEEQQPPAGAEELASQKREQRLRKFR.LH.KRNEARKLNHQEVVEE.KRLKLPAN.EAKKARLEWEL | |
Retrocopy | VGGAEEQQPPAGAEELASQKREQRLRKFRKLHRKRNEARKLNHQEVVEENKRLKLPANLEAKKARLEWEL |
Parental | QEEEKKKECAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETY |
QEEEKKKECAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETY | |
Retrocopy | QEEEKKKECAARGEDYEKVKLLEISAEDAERWERKKRRKNPDLGFSDYAAAQLRQYHRLTKQIKPDMETY |
Parental | ERLREKHGEEFFPTSNSLLHGTHVPSTEE |
E.LREKHGEEFFPTSNSLLHGTHVPSTEE | |
Retrocopy | EKLREKHGEEFFPTSNSLLHGTHVPSTEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 26 .03 RPM |
ERP005899_muscle | 0 .48 RPM | 16 .26 RPM |
SRP017611_brain | 0 .59 RPM | 19 .46 RPM |
SRP017611_kidney | 0 .71 RPM | 30 .82 RPM |
SRP017611_liver | 0 .23 RPM | 16 .23 RPM |
SRP030211_testis | 0 .81 RPM | 36 .31 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010115 | 1 retrocopy | |
Bos taurus | ENSBTAG00000001651 | 1 retrocopy |
retro_btau_478 ,
|
Choloepus hoffmanni | ENSCHOG00000005273 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018559 | 1 retrocopy | |
Homo sapiens | ENSG00000117614 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000013951 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013050 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000007152 | 1 retrocopy |