RetrogeneDB ID: | retro_ocun_1522 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 9:90328952..90329540(-) | ||
Located in intron of: | ENSOCUG00000015851 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SYF2 | ||
Ensembl ID: | ENSOCUG00000013050 | ||
Aliases: | None | ||
Description: | SYF2 homolog, RNA splicing factor (S. cerevisiae) [Source:HGNC Symbol;Acc:19824] |
Percent Identity: | 79.02 % |
Parental protein coverage: | 81.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | RNEARKLNHQEVVEEDKRLKLPANWEAKKARLEWELQEEEKKKECAARGEDYEK-VKLLEISAEDAERWE |
.NEARKLNHQEVVEEDKRLKL.ANWEAKKARLEW.LQEEEKK.ECAARG.D.EK..KLLE.SAEDAERWE | |
Retrocopy | QNEARKLNHQEVVEEDKRLKLLANWEAKKARLEWKLQEEEKKEECAARGKDSEK<MKLLETSAEDAERWE |
Parental | RKKKRKNPDLGFSDYAAAQLRQYHRLTK-QIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSAEEIDR |
...K..NP...FSDYA.AQLRQYHRLT..QIKPDM.TYERLREKHGEE.FPTSNSLL.GTH.PS..EI.R | |
Retrocopy | --EKEENPHPAFSDYADAQLRQYHRLTL>QIKPDMDTYERLREKHGEELFPTSNSLLQGTHMPST-EINR |
Parental | MVTDLEKQIEKRDKYSRRRPYNDDADI-DYINERNAKF-NKKAERFYG-KYTAEIKQNLERGTAV |
MVT.L.K.IE.RDK..RR.PYNDD.D..D.INERNAKF..KKAERFY..KYTAEIK.NLERGTAV | |
Retrocopy | MVTELAKRIEPRDKHTRRHPYNDDVDL<DCINERNAKF<RKKAERFYR<KYTAEIK*NLERGTAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 27 .32 RPM |
SRP017611_kidney | 0 .00 RPM | 38 .92 RPM |
SRP017611_liver | 0 .00 RPM | 15 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010115 | 1 retrocopy | |
Bos taurus | ENSBTAG00000001651 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005273 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018559 | 1 retrocopy | |
Homo sapiens | ENSG00000117614 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000013951 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013050 | 1 retrocopy |
retro_ocun_1522 ,
|
Sarcophilus harrisii | ENSSHAG00000007152 | 1 retrocopy |