RetrogeneDB ID: | retro_btau_490 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 12:24696460..24697004(-) | ||
Located in intron of: | ENSBTAG00000011860 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C3H1orf146 | ||
Ensembl ID: | ENSBTAG00000027936 | ||
Aliases: | C3H1orf146, C1orf146 | ||
Description: | None |
Percent Identity: | 95.6 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAES-DGKEKIKWTTTIIISSSLKSYEVAAALENRSHKVRYSDSVENGSIIFSLSGVAFLLMDARECFMS |
MAES.DGK.KIKWTTTIIISSSLKSYEVAAALENRSHKV.YSDSVENGSIIFSLSGVAFLLMDARECFMS | |
Retrocopy | MAES>DGKGKIKWTTTIIISSSLKSYEVAAALENRSHKVQYSDSVENGSIIFSLSGVAFLLMDARECFMS |
Parental | AEETFLAKIEKFINIHQNSFLVLFAALHGPEEWKLMFRIQQRFLGSNLRILPVHNTVNAINLMCTIAKIT |
A.ETFLAKIEKFINI.QNSFLVL.AALHGPEEWKLMFRIQQRFLGSNL.ILPVHNTVN.INLMCTIAKIT | |
Retrocopy | AKETFLAKIEKFINIYQNSFLVLSAALHGPEEWKLMFRIQQRFLGSNLWILPVHNTVNTINLMCTIAKIT |
Parental | SKSYIDSICYRMITTKAYIIEQSPVWKTLQKIKLSSDTFNPN |
SKSYIDSICYRMITTKAYIIEQSPVWKTLQKIKLSSDTFNPN | |
Retrocopy | SKSYIDSICYRMITTKAYIIEQSPVWKTLQKIKLSSDTFNPN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 1 .51 RPM | 0 .14 RPM |
ERP005899_muscle | 1 .48 RPM | 0 .11 RPM |
SRP017611_brain | 0 .09 RPM | 0 .27 RPM |
SRP017611_kidney | 0 .83 RPM | 0 .30 RPM |
SRP017611_liver | 0 .08 RPM | 0 .00 RPM |
SRP030211_testis | 0 .27 RPM | 7 .56 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000027936 | 1 retrocopy |
retro_btau_490 ,
|
Choloepus hoffmanni | ENSCHOG00000004012 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017547 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003083 | 1 retrocopy | |
Homo sapiens | ENSG00000203910 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006653 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013311 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016984 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010094 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010426 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001156 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000030530 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012506 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014426 | 1 retrocopy |