RetrogeneDB ID: | retro_hsap_3381 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:125221973..125222429(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000249904 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C1orf146 | ||
Ensembl ID: | ENSG00000203910 | ||
Aliases: | None | ||
Description: | chromosome 1 open reading frame 146 [Source:HGNC Symbol;Acc:24032] |
Percent Identity: | 56.96 % |
Parental protein coverage: | 86.11 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 3 |
Parental | IIISSSLKSYEVATALENRSHKVRYSDS-VENGSIIF-SLSGVAFLLMDTKECL-LSTEEIFLAKIEKFI |
..ISS.L..YEV..ALEN.S.K...S....ENGSIIF...S.V.F.L.D.KECL....E..FLAK.EKFI | |
Retrocopy | VSISSFL*CYEVVAALEN*SRKFW*SNK<MENGSIIF<PFSVVTF*LVDAKECL<MLAEALFLAKYEKFI |
Parental | NIHQNSFLVLSAALHGPEEWKLMFRIQQRFLGCNLRILPVHNTVNAINLMCTIAKTTSKPYIDSICYRMI |
NIH.N.FL.LSAAL.G.E.W.L...IQQRFL..NL.I..V.N.V..INL..TIAKTT.....DS.CY... | |
Retrocopy | NIH*NNFLNLSAALYGLEKWELL-SIQQRFLSSNLQIVSV*NIVSVINLVHTIAKTTLYRNMDSLCYG-V |
Parental | TAKAYIIEQSPVWKTLQK |
.AKAYIIE..P..KT..K | |
Retrocopy | AAKAYIIE*NPG*KTQDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 0 .00 RPM |
bodymap2_adrenal | 0 .00 RPM | 0 .18 RPM |
bodymap2_brain | 0 .00 RPM | 0 .61 RPM |
bodymap2_breast | 0 .00 RPM | 0 .08 RPM |
bodymap2_colon | 0 .00 RPM | 0 .00 RPM |
bodymap2_heart | 0 .00 RPM | 0 .00 RPM |
bodymap2_kidney | 0 .00 RPM | 0 .10 RPM |
bodymap2_liver | 0 .00 RPM | 0 .00 RPM |
bodymap2_lung | 0 .00 RPM | 0 .00 RPM |
bodymap2_lymph_node | 0 .00 RPM | 0 .15 RPM |
bodymap2_ovary | 0 .00 RPM | 0 .31 RPM |
bodymap2_prostate | 0 .00 RPM | 0 .00 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .00 RPM |
bodymap2_testis | 0 .00 RPM | 5 .69 RPM |
bodymap2_thyroid | 0 .00 RPM | 0 .02 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .18 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2298 |
Gorilla gorilla | retro_ggor_2289 |
Pongo abelii | retro_pabe_2780 |
Macaca mulatta | retro_mmul_2107 |
Callithrix jacchus | retro_cjac_1817 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000027936 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000004012 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017547 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003083 | 1 retrocopy | |
Homo sapiens | ENSG00000203910 | 1 retrocopy |
retro_hsap_3381 ,
|
Gorilla gorilla | ENSGGOG00000006653 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013311 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016984 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010094 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010426 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001156 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000030530 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012506 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014426 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |