RetrogeneDB ID: | retro_cfam_1119 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 23:13584188..13584465(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C2orf76 | ||
Ensembl ID: | ENSCAFG00000004896 | ||
Aliases: | None | ||
Description: | chromosome 2 open reading frame 76 [Source:HGNC Symbol;Acc:27017] |
Percent Identity: | 69.89 % |
Parental protein coverage: | 73.02 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TKEFIVFLKQDIPLRTSLPPPFRNYKYDKLKIVHQAHKAKTNELVLSLEDDDTLM-LKEDSTLQAAGIAH |
T.EFIVFLKQD.PLRTSL..PFRNYK.DK.KI..QA.K.K..EL.LSL.DDD....LKED.T..AA..A. | |
Retrocopy | T*EFIVFLKQDEPLRTSLSLPFRNYKCDKQKIIPQAYKPKATELLLSLGDDDRFS>LKEDRTPKAARMAN |
Parental | ETEIAFFREEDYKNYKANPISSW |
ETEIAFF.EEDYKNYK..PI.SW | |
Retrocopy | ETEIAFFCEEDYKNYKTHPI*SW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 4 .75 RPM |
SRP017611_brain | 0 .00 RPM | 4 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .94 RPM |
SRP017611_liver | 0 .00 RPM | 3 .63 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_965 |
Equus caballus | retro_ecab_384 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008507 | 2 retrocopies | |
Bos taurus | ENSBTAG00000010599 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000004896 | 2 retrocopies |
retro_cfam_1119 , retro_cfam_1727,
|
Equus caballus | ENSECAG00000002063 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004031 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000943 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026388 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000011615 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000015718 | 1 retrocopy |