RetrogeneDB ID: | retro_cfam_1727 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 5:25225391..25225758(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C2orf76 | ||
Ensembl ID: | ENSCAFG00000004896 | ||
Aliases: | None | ||
Description: | chromosome 2 open reading frame 76 [Source:HGNC Symbol;Acc:27017] |
Percent Identity: | 67.72 % |
Parental protein coverage: | 99.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MASKEVTITVRLIRSFEHRNFKPIVYHGVNLDQTTKEFIVFLKQDIPLRTSL-PPPFRNYKYDKLKIVHQ |
M.S.EVTITV.LI.S.E....KP.V.HGVNL....KEF.VFLKQD..LRTSL..PPFRNYKYDKLK..HQ | |
Retrocopy | MTSGEVTITVCLIHSSENHKYKPVVDHGVNLEYNVKEFRVFLKQDASLRTSL<APPFRNYKYDKLKTTHQ |
Parental | A-HKAKTNELVLSLEDDDTLMLKEDSTLQAAGIAHETEIAFFREEDYKNYKANPISS |
A..K.KT..LVLSL..D..L.LKE.S.L.A..I..ETEIAFF.EEDY.NYKANPISS | |
Retrocopy | A<NKSKTD*LVLSLKNDRPL-LKEGSNLKAR-INNETEIAFFCEEDYENYKANPISS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 4 .75 RPM |
SRP017611_brain | 0 .00 RPM | 4 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .94 RPM |
SRP017611_liver | 0 .00 RPM | 3 .63 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008507 | 2 retrocopies | |
Bos taurus | ENSBTAG00000010599 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000004896 | 2 retrocopies |
retro_cfam_1119, retro_cfam_1727 ,
|
Equus caballus | ENSECAG00000002063 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004031 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000943 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026388 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000011615 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000015718 | 1 retrocopy |