RetrogeneDB ID: | retro_cfam_1237 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 27:5910207..5910609(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000008954 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PGRMC1 | ||
Ensembl ID: | ENSCAFG00000018372 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris progesterone receptor membrane component 1 (PGRMC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001195148] |
Percent Identity: | 79.86 % |
Parental protein coverage: | 69.23 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | DEPPP-LPRLKRRDFTPAELRR-FDGVQDPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLAT |
D.PPP.LPRLK..DFTP..LR...DG.QDP.ILM.IN.KVF.VTKG.KFYGPEGPYGVFAGRDASRGLAT | |
Retrocopy | DQPPP<LPRLKPPDFTPV*LRH<LDGIQDPHILMTINCKVFIVTKGCKFYGPEGPYGVFAGRDASRGLAT |
Parental | FCLDKEALKEEYDDLSDLTPAQ-QETLSDWDSQFTFKYHHVGKLLKEG-EEPTVYSDEEEAKDENARKN |
FCLDKEALK.EYDDLSDLTPAQ..ET.SDWDSQFTFKYH..G.....G.EEPT.YSDEEEAKDENARKN | |
Retrocopy | FCLDKEALKDEYDDLSDLTPAQ>RETPSDWDSQFTFKYHR-GQTAEGG>EEPTAYSDEEEAKDENARKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 109 .49 RPM |
SRP017611_brain | 0 .00 RPM | 110 .51 RPM |
SRP017611_kidney | 0 .13 RPM | 432 .74 RPM |
SRP017611_liver | 0 .00 RPM | 353 .21 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018372 | 1 retrocopy |
retro_cfam_1237 ,
|
Homo sapiens | ENSG00000101856 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014466 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014842 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020666 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000012786 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000024047 | 1 retrocopy |