RetrogeneDB ID: | retro_itri_1619 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393577.1:511605..511917(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PGRMC1 | ||
Ensembl ID: | ENSSTOG00000024047 | ||
Aliases: | None | ||
Description: | progesterone receptor membrane component 1 [Source:HGNC Symbol;Acc:16090] |
Percent Identity: | 66.35 % |
Parental protein coverage: | 53.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDW |
P.IL...NGKVFDVTKG.KFY.P.GPYG.FAGRDASRGLATF.LDK.AL.DEYDDLSDL...Q.E....W | |
Retrocopy | PSILLEVNGKVFDVTKGSKFYSPAGPYGIFAGRDASRGLATFYLDKDALRDEYDDLSDLNAVQMESVRAW |
Parental | DSQFTFKYHHVGKLLKEGEEPTVYSDDEEPKDEN |
..QF..KY..VG.LLK.GEEP....D.E..KD.N | |
Retrocopy | EMQFKEKYDYVGRLLKPGEEPSECTDKEDTKDHN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018372 | 1 retrocopy | |
Homo sapiens | ENSG00000101856 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014466 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014842 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020666 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000012786 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000024047 | 1 retrocopy |
retro_itri_1619 ,
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