RetrogeneDB ID: | retro_mmul_1252 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 16:29622247..29622547(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2318 | ||
Ensembl ID: | ENSMMUG00000014466 | ||
Aliases: | None | ||
Description: | membrane-associated progesterone receptor component 1 [Source:RefSeq peptide;Acc:NP_001181847] |
Percent Identity: | 66.35 % |
Parental protein coverage: | 51.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | GKVFDVTKGRKFYGP-EGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTAAQQETLSDWESQFTFK |
GKVF..T...KF.GP..GP...FA.RD.SRG.ATFCLDK.AL.D..DD.SDL..AQQETLSDW.SQF.FK | |
Retrocopy | GKVFNMTRDCKFQGP<KGPHRIFAERDTSRGPATFCLDKVALQDKHDDFSDLPPAQQETLSDWASQFAFK |
Parental | YHHVGKLLKE-GEEPTVYSD-EEEPKDESARKND |
Y.H..KLLKE.GE.PTV.S...EEPKDE...KND | |
Retrocopy | YPHLDKLLKE<GEVPTVDSE<KEEPKDENVQKND |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 91 .32 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 98 .85 RPM |
SRP007412_cerebellum | 0 .00 RPM | 61 .80 RPM |
SRP007412_heart | 0 .00 RPM | 11 .42 RPM |
SRP007412_kidney | 0 .00 RPM | 160 .68 RPM |
SRP007412_liver | 0 .00 RPM | 381 .19 RPM |
SRP007412_testis | 0 .00 RPM | 3 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1824 |
Gorilla gorilla | retro_ggor_2170 |
Pongo abelii | retro_pabe_1491 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000018372 | 1 retrocopy | |
Homo sapiens | ENSG00000101856 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014466 | 1 retrocopy |
retro_mmul_1252 ,
|
Nomascus leucogenys | ENSNLEG00000014842 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020666 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000012786 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000024047 | 1 retrocopy |