RetrogeneDB ID: | retro_cfam_1264 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 28:12481874..12482774(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARMC10 | ||
Ensembl ID: | ENSCAFG00000004247 | ||
Aliases: | None | ||
Description: | armadillo repeat containing 10 [Source:HGNC Symbol;Acc:21706] |
Percent Identity: | 87.46 % |
Parental protein coverage: | 64.61 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | SMGGARDVGWVAAGLVLGAGACYYIYKLARGRRRGARGLRLRPSRSAEDLTNGSYDDVLNVDQLQKLLYL |
SMGGA.DVGWVA.GLVL.A.ACY.IYKL.RG...G..GLRLRPS.S.EDLT.GS.DDVLNVDQLQKLLYL | |
Retrocopy | SMGGAWDVGWVAEGLVLRASACYCIYKLMRGWW*GTHGLRLRPSHSVEDLTSGSHDDVLNVDQLQKLLYL |
Parental | LESTDDPVIIERALVTLGNNAAFSANQVIIRELGGIPIIGSKINNPNHSIKEKALNALNNLSVNVENQVK |
LESTDDPVII.RALVTLGNNA.FSANQVIIRELGGIPII.SKINNPNHS.KEKA.NALNNLSVN.ENQVK | |
Retrocopy | LESTDDPVII*RALVTLGNNAGFSANQVIIRELGGIPIIESKINNPNHSLKEKA*NALNNLSVNLENQVK |
Parental | IKVYINQVCKDVLSGPLDSAVQLAGLRLLTNMTVTNDHQHMLTDYVTDLFHVLLTGDGSTKVQVLKLLVN |
IKVYINQVCKDVL.GPLDSAVQLAGLRLLTNMTVTN.HQHMLTDY.TDL...LLTGDGST.VQVLKLLVN | |
Retrocopy | IKVYINQVCKDVLFGPLDSAVQLAGLRLLTNMTVTNNHQHMLTDYITDL---LLTGDGSTMVQVLKLLVN |
Parental | LSENPAMTEVLLGAQVDSSFVSLYDGHVAKEILLRVLTLSQNINNCLEKGSLAVQPTFPKGSLFFLLYGE |
LSENPAMT.VLLG.Q.DSSF.SLYD.HVAKEILLRVLTLSQNINNC.EKGSLAVQPTFPKGSLFFLLYG. | |
Retrocopy | LSENPAMTKVLLGSQMDSSFLSLYDHHVAKEILLRVLTLSQNINNCFEKGSLAVQPTFPKGSLFFLLYGK |
Parental | ECAQKMRALAKHHDADVKEKIDV |
.CAQKMRALAKHHDADVKEK..V | |
Retrocopy | *CAQKMRALAKHHDADVKEKVIV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 17 .93 RPM |
SRP017611_brain | 0 .00 RPM | 18 .42 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .08 RPM |
SRP017611_liver | 0 .00 RPM | 3 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000004247 | 1 retrocopy |
retro_cfam_1264 ,
|
Choloepus hoffmanni | ENSCHOG00000002095 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000021208 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000019936 | 1 retrocopy | |
Homo sapiens | ENSG00000170632 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010160 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006088 | 3 retrocopies | |
Mus musculus | ENSMUSG00000038525 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000008914 | 1 retrocopy |