RetrogeneDB ID: | retro_mluc_1825 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429922:1553419..1554145(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARMC10 | ||
Ensembl ID: | ENSMLUG00000006088 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.2 % |
Parental protein coverage: | 91.73 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | LNAEQLQKLLYLLELTEDPAIIERALVTLGNNAAFSANQVIIRELGGIPIVGSKIKDPNHSIKEKALNAL |
L.AE.L..LL.LLE.TE.P.IIE.ALVTL..N...SA...I.REL.GIPI.GSKI.DPNHS.KEKAL.A. | |
Retrocopy | LDAEPLEELLHLLESTEHPIIIEKALVTLSSNVGSSAKHIILRELDGIPIIGSKIGDPNHSNKEKALKAR |
Parental | SNLSVNVENQ-IKIKVYVNQVCEDVLSGPLNS-PVQLA-GLRLLTNMTVTNDHQHMFTNYITDLFQVLLA |
S.LSV.VEN...KIKV.V.QVCEDV.SGPLNS.PVQLA.GLR.LTNMTVTN.HQH....YIT..FQVLL. | |
Retrocopy | SHLSVDVENK<MKIKVHVSQVCEDVFSGPLNS<PVQLA<GLRWLTNMTVTNNHQHTLNSYITG*FQVLLT |
Parental | GNGTTKVQVLKLLLNLSENPAMTE-GLLGAQVDSSFLSLYDGHVAKEILLRALTLFQNINNCLKKEGHLT |
GN..TKVQVLKLLLN.SEN.A.TE.GLLG.QV.SS.LSL.DGHVAK.ILLR.LTLFQ...NCLKKEGHL. | |
Retrocopy | GNRGTKVQVLKLLLNVSENAARTE<GLLGIQVGSSSLSL*DGHVAKGILLRGLTLFQDVSNCLKKEGHLA |
Parental | VQPTFTQ-GSLFFLLYGEECAQKMRALV-NHHDADVKEKL |
.QPT.T...SLFFLLYGEE.AQ.M..LV..HHDADVK.K. | |
Retrocopy | IQPTVTK<SSLFFLLYGEERAQEMGVLV<YHHDADVKAKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000004247 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000002095 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000021208 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000019936 | 1 retrocopy | |
Homo sapiens | ENSG00000170632 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010160 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006088 | 3 retrocopies |
retro_mluc_1587, retro_mluc_1825 , retro_mluc_624,
|
Mus musculus | ENSMUSG00000038525 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000008914 | 1 retrocopy |