RetrogeneDB ID: retro_mluc_1587

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429866:2621072..2621662(-)
• Located in intron of: ENSMLUG00000003866

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ARMC10
• Ensembl ID: ENSMLUG00000006088
• Aliases: None
• Description: None

Sequence

>retro_mluc_1587
TCATATGATGTTGTTCTAAATGCTGAACAACTTCAGAACTCCTTTATCTACTTGAGTCAACTGAGGATCCTGTAATTATT
TAAAGAGATTTGGTCACTTTTGGTAACAATGCAGCCTTTTCAGCTAATCAAGTCATTATTCGTGAATTGGTTGGTATTCC
AATAGTTGGTAGCAAAATCAACAATCCCAACCACAATATTAAAAAGAAGGCTTTCAATACACTGAGTAACCTGAGTGTGA
ATGTTAGAAATCAATTCACTTTAAAGGTATATGTCAATCAAGTTTGTGAGGATGTCTTCTCTGGTCCTCTGAACTCCCCT
GTGCAACTGGTGGGACTGAGATGGTTAACAAACATGACAGTTACCAAAGACCACCAGCACATGCCTAACAGTTACATTAC
AGACCTGTTCGAAGTGTTGCTTTCAGGAAATAGAAGCACCAACATTCAAGTTTTGAAACTGCTGTTGAATTTGTCTGAAA
CTCCAGCCATGACAGAAGGACAACTTGGTGCCCAAGTGGATACATCATTCCTTTCCCTTTATGATGGTCATGTGGCAAAG
GAGATTCTTCTTCAAGGTCTTACACTCTTT

Alignment

ORF - retro_mluc_1587 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.31 %
• Parental protein coverage: 74.06 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SYDDVLNAEQLQ-KLLYLLELTEDPAIIERALVTLGNNAAFSANQVIIRELGGIPIVGSKIKDPNHSIKE
          SYD.VLNAEQLQ..LLYLLE.TEDP.II.R.LVT.GNNAAFSANQVIIREL.GIPIVGSKI..PNH.IK.
Retrocopy SYDVVLNAEQLQ<ELLYLLESTEDPVII*RDLVTFGNNAAFSANQVIIRELVGIPIVGSKINNPNHNIKK

Parental  KALNALSNLSVNVENQIKIKVYVNQVCEDVLSGPLNSPVQLAGLRLLTNMTVTNDHQHMFTNYITDLFQV
          KA.N.LSNLSVNV.NQ...KVYVNQVCEDV.SGPLNSPVQL.GLR.LTNMTVT.DHQHM...YITDLF.V
Retrocopy KAFNTLSNLSVNVRNQFTLKVYVNQVCEDVFSGPLNSPVQLVGLRWLTNMTVTKDHQHMPNSYITDLFEV

Parental  LLAGNGTTKVQVLKLLLNLSENPAMTEGLLGAQVDSSFLSLYDGHVAKEILLRALTLF
          LL.GN..T..QVLKLLLNLSE.PAMTEG.LGAQVD.SFLSLYDGHVAKEILL..LTLF
Retrocopy LLSGNRSTNIQVLKLLLNLSETPAMTEGQLGAQVDTSFLSLYDGHVAKEILLQGLTLF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1587 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000004247	1 retrocopy	retro_cfam_1264,
Choloepus hoffmanni	ENSCHOG00000002095	1 retrocopy	retro_chof_2665,
Callithrix jacchus	ENSCJAG00000021208	2 retrocopies	retro_cjac_1758, retro_cjac_2104,
Cavia porcellus	ENSCPOG00000019936	1 retrocopy	retro_cpor_1022,
Homo sapiens	ENSG00000170632	1 retrocopy	retro_hsap_2815,
Microcebus murinus	ENSMICG00000010160	1 retrocopy	retro_mmur_638,
Myotis lucifugus	ENSMLUG00000006088	3 retrocopies	retro_mluc_1587 , retro_mluc_1825, retro_mluc_624,
Mus musculus	ENSMUSG00000038525	3 retrocopies	retro_mmus_1292, retro_mmus_2256, retro_mmus_969,
Vicugna pacos	ENSVPAG00000008914	1 retrocopy	retro_vpac_19,