RetrogeneDB ID: | retro_cfam_1449 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 31:18652912..18653321(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RCHY1 | ||
Ensembl ID: | ENSCAFG00000032536 | ||
Aliases: | None | ||
Description: | ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:17479] |
Percent Identity: | 89.21 % |
Parental protein coverage: | 52.9 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAAAAREDGAR-GREQGLRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQ |
M.A...EDGA..G..QG.RGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLD.FKVKEVQCINCEKIQ | |
Retrocopy | MTASVQEDGAL<GQKQGWRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDGFKVKEVQCINCEKIQ |
Parental | HAQQSCEECSTLFGEYYCSICHLFDKDKKQYHCE-NCGICRIGPKEDFFHCLKCNLCLAMNLQGKHKCI |
HAQQ.CEECSTLFGEYYCSICHLFD.DKKQYHCE.NCGICRIGPKEDFFHCLKCNLCL.MNLQGKHK.I | |
Retrocopy | HAQQTCEECSTLFGEYYCSICHLFDQDKKQYHCE<NCGICRIGPKEDFFHCLKCNLCLGMNLQGKHKDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .17 RPM | 20 .71 RPM |
SRP017611_brain | 0 .08 RPM | 11 .99 RPM |
SRP017611_kidney | 0 .53 RPM | 92 .58 RPM |
SRP017611_liver | 0 .07 RPM | 14 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000032536 | 1 retrocopy |
retro_cfam_1449 ,
|
Choloepus hoffmanni | ENSCHOG00000011650 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003266 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019197 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000002546 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000013786 | 1 retrocopy |