RetrogeneDB ID: | retro_rnor_607 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:146923196..146923642(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rchy1 | ||
Ensembl ID: | ENSRNOG00000002546 | ||
Aliases: | None | ||
Description: | RING finger and CHY zinc finger domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001007619] |
Percent Identity: | 76. % |
Parental protein coverage: | 57.09 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | KEDFFHCLKCNLCLAMTLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR |
K....HCLKCNL.LA..LRGK..CIENVSRQNCP..LEDIHTS.VVAHVLPCGH.LHRTCYEE.LKEGYR | |
Retrocopy | KXXXXHCLKCNLFLAVNLRGKRTCIENVSRQNCPM*LEDIHTSHVVAHVLPCGHILHRTCYEETLKEGYR |
Parental | CPLCMHSALDMTRYWRQLDIEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAG |
CPLCMHSA.DMT.YWRQLD.EVAQ..MP.EYQN.T..IL.N..NG.STVQ..ILGMK.KLCDS.NTAQAG | |
Retrocopy | CPLCMHSAVDMTQYWRQLDNEVAQISMPWEYQNMTAGIL*NNSNG*STVQINILGMKYKLCDS*NTAQAG |
Parental | -GRTVSMDEQ |
.G..VS.D.Q | |
Retrocopy | <GTRVSVDQQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 22 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 31 .12 RPM |
SRP017611_liver | 0 .00 RPM | 13 .58 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000032536 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011650 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003266 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019197 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000002546 | 2 retrocopies |
retro_rnor_1127, retro_rnor_607 ,
|
Tursiops truncatus | ENSTTRG00000013786 | 1 retrocopy |