RetrogeneDB ID: | retro_rnor_1127 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 15:87444195..87444628(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000024599 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rchy1 | ||
Ensembl ID: | ENSRNOG00000002546 | ||
Aliases: | None | ||
Description: | RING finger and CHY zinc finger domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001007619] |
Percent Identity: | 85.52 % |
Parental protein coverage: | 55.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | HCLKCNLCLAMTLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCM |
HCLKCNLCL.M.LRGKHKCIENVS.QNCPICLEDIHTS.VV.HVLPCGHLL.R.CYEEMLKEGYRC.LC. | |
Retrocopy | HCLKCNLCLVMNLRGKHKCIENVSWQNCPICLEDIHTSCVVVHVLPCGHLLNRMCYEEMLKEGYRCLLCK |
Parental | HSALDMTRYWRQLDIEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAG-GRTV |
HSALDMTRYWRQLD..VA.TPMPSEY.NVTVDILCNDC.GRSTVQFHIL.MKCKL.DSYNTAQAG.GR.V | |
Retrocopy | HSALDMTRYWRQLDNQVAPTPMPSEYRNVTVDILCNDCTGRSTVQFHILVMKCKLRDSYNTAQAG>GRRV |
Parental | SMDEQ |
S...Q | |
Retrocopy | SGVQQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 22 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 31 .12 RPM |
SRP017611_liver | 0 .00 RPM | 13 .58 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000032536 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011650 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003266 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019197 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000002546 | 2 retrocopies |
retro_rnor_1127 , retro_rnor_607,
|
Tursiops truncatus | ENSTTRG00000013786 | 1 retrocopy |