RetrogeneDB ID: | retro_cfam_1485 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 32:882410..882697(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C3orf14 | ||
Ensembl ID: | ENSCAFG00000007123 | ||
Aliases: | None | ||
Description: | chromosome 3 open reading frame 14 [Source:HGNC Symbol;Acc:25024] |
Percent Identity: | 64.36 % |
Parental protein coverage: | 78.12 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SQRLMLLQQMEDKFIDKNKEKASQMKAAETAFKRNLSLLMDIEAAEKSLQTRIHSIPSPEVVSLETLYWA |
SQRL.LL.Q.E.K..D.NKEK.SQM.AA.TAF.RN.SLL.DIE.AEKS..T.I.....PEVVSLET.YW. | |
Retrocopy | SQRLILL*QIERKPVDENKEKSSQMQAADTAFMRNVSLLKDIETAEKSQKTQI----PPEVVSLETPYWT |
Parental | SVEEYIPKWEQFLLGRAP-YPIGVENENEAE |
SVEEY..K.EQ..LGRAP.Y.I..ENEN... | |
Retrocopy | SVEEYTHK*EQCHLGRAP<YSIKIENENKTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 12 .31 RPM |
SRP017611_brain | 0 .00 RPM | 10 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .53 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015374 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000007123 | 1 retrocopy |
retro_cfam_1485 ,
|
Choloepus hoffmanni | ENSCHOG00000004965 | 7 retrocopies | |
Erinaceus europaeus | ENSEEUG00000000474 | 1 retrocopy | |
Felis catus | ENSFCAG00000027983 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013085 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000016406 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000016914 | 1 retrocopy | |
Mus musculus | ENSMUSG00000033111 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008107 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000017312 | 1 retrocopy |