RetrogeneDB ID: retro_mputfur_751

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896944.1:12576485..12576859(+)
• Located in intron of: ENSMPUG00000003799

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C3orf14
• Ensembl ID: ENSMPUG00000016914
• Aliases: None
• Description: chromosome 3 open reading frame 14 [Source:HGNC Symbol;Acc:25024]

Sequence

>retro_mputfur_751
ATGACTTCCTTATTTGGTTCAGAAATTCTCCTTTCAAAAAGACATGAAGAAACAGTATCATAAAGATTATTACTTTGACA
AACGGAGAATAAATCTGTAGATGAAAACAAGGAAAAGGCATCTCAGATGCAAACATCTGAGACTAGATTAAAAGGTACCT
TAGTCTTTTAAAGGATATAGAAGCAGGAGAGAAGTGTTTCCAGACCCAGACTGACCCGATTCCACCACCAGAGGTGGTTT
CTCTTGAGACTCTTCACTGGGCATCAAAAGAGTATATTCTCAAATGGGATCAGTTTCTTTTAGGAAGAGCACCATATCCT
ACTGGTGTTGAAAATGAAAATGACATAGGAAGTACTATTCAAGATGAGGCGCGG

Alignment

ORF - retro_mputfur_751 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.53 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MTSLFAQEIHLSKRHEEIVSQRLMLLQQMDNKFIDENKGKASQMQAAETAFK-RNLSLLMDIEAAEKSLQ
          MTSLF..EI.LSKRHEE.VS.RL.LL.Q..NK..DENK.KASQMQ..ET..K.R.LSLL.DIEA.EK..Q
Retrocopy MTSLFGSEILLSKRHEETVS*RL-LL*QTENKSVDENKEKASQMQTSETRLK<RYLSLLKDIEAGEKCFQ

Parental  TRIHPIPSPEVVSLETLYWASVEEYIPKWEQFLLGRAPYPIGVENENEAENTVQNEAQ
          T...PIP.PEVVSLETL.WAS..EYI.KW.QFLLGRAPYP.GVENEN....T.Q.EA.
Retrocopy TQTDPIPPPEVVSLETLHWAS-KEYILKWDQFLLGRAPYPTGVENENDIGSTIQDEAR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_751 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_751 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000015374	1 retrocopy	retro_amel_1312,
Canis familiaris	ENSCAFG00000007123	1 retrocopy	retro_cfam_1485,
Choloepus hoffmanni	ENSCHOG00000004965	7 retrocopies	retro_chof_138, retro_chof_2082, retro_chof_423, retro_chof_536, retro_chof_659, retro_chof_73, retro_chof_96,
Erinaceus europaeus	ENSEEUG00000000474	1 retrocopy	retro_eeur_656,
Felis catus	ENSFCAG00000027983	1 retrocopy	retro_fcat_577,
Macropus eugenii	ENSMEUG00000013085	2 retrocopies	retro_meug_1990, retro_meug_2091,
Microcebus murinus	ENSMICG00000016406	1 retrocopy	retro_mmur_461,
Mustela putorius furo	ENSMPUG00000016914	1 retrocopy	retro_mputfur_751 ,
Mus musculus	ENSMUSG00000033111	1 retrocopy	retro_mmus_1255,
Otolemur garnettii	ENSOGAG00000008107	2 retrocopies	retro_ogar_484, retro_ogar_485,
Tupaia belangeri	ENSTBEG00000017312	1 retrocopy	retro_tbel_1713,