RetrogeneDB ID: | retro_cfam_1886 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 7:67304341..67304957(-) | ||
Located in intron of: | ENSCAFG00000018331 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PNO1 | ||
Ensembl ID: | ENSCAFG00000003256 | ||
Aliases: | None | ||
Description: | partner of NOB1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:32790] |
Percent Identity: | 72.82 % |
Parental protein coverage: | 80.71 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | DTEEARPAKRPVFPPLAGDGVLGGKEETRKIAVPANRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVE |
D..EA.PAKRP.FP...G.G.LGGKEE.RKI..PANR..P.KENW.K..TPI.EH..LQ.RF.LK.RNVE | |
Retrocopy | DPTEAQPAKRPIFPLPTGQGFLGGKEERRKIPGPANRHMPFKENWTKRVTPILEHSRLQVRFTLKLRNVE |
Parental | IRTCKETKDVSALTKAADFVKAFILGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKG |
IRTCKETKDV.ALT.A...V.AF.LGF.VE.ALAL.R.DDL.LES.EITDVKP.KGDHLSRAIGRI.GKG | |
Retrocopy | IRTCKETKDVCALTEAVSPV*AFLLGFPVEEALALVRWDDLSLESLEITDVKPVKGDHLSRAIGRISGKG |
Parental | GKTKFTI-ENVTRTRIVLADVKVHILGSFQNIKMARTAICNLILGNPPSKVYGNIRAVASRAADRF |
..TKF.I.ENVT.T.IVLADVKVH..GSF..I.MARTAICNLILGNPPS..YG.IRAV.S.AAD.F | |
Retrocopy | ETTKFAI>ENVTQTQIVLADVKVHNVGSF*SIRMARTAICNLILGNPPSQLYGSIRAVLSSAADQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 22 .93 RPM |
SRP017611_brain | 0 .00 RPM | 17 .63 RPM |
SRP017611_kidney | 0 .00 RPM | 34 .54 RPM |
SRP017611_liver | 0 .00 RPM | 15 .66 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003256 | 1 retrocopy |
retro_cfam_1886 ,
|
Callithrix jacchus | ENSCJAG00000006564 | 3 retrocopies | |
Felis catus | ENSFCAG00000025330 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000046 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010897 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010850 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017461 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009993 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006100 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016637 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012353 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005524 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008352 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000004007 | 1 retrocopy |