RetrogeneDB ID: | retro_tsyr_1625 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_5168:66319..66702(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PNO1 | ||
Ensembl ID: | ENSTSYG00000004007 | ||
Aliases: | None | ||
Description: | partner of NOB1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:32790] |
Percent Identity: | 68.22 % |
Parental protein coverage: | 50.79 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VPANRYTPLKENWM-KIFTPIVEHLGLQIRFNLKSKNVEIRTCKDTKDVSALTKAADFVKAFILGFQVED |
V...R.T.LKEN...KIFT.I.EHL.LQ..FNLKS.NVEIRTCK...DVSAL..AADF..AFI.GFQVE. | |
Retrocopy | VTTQRCTALKEN*I<KIFTLIIEHLRLQVLFNLKSRNVEIRTCKEAMDVSALPQAADFLTAFIFGFQVEN |
Parental | ALALIRLDDLFLETFEITDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADV |
.L.LIR..D..LE.FEITDVKP.KGDHLSR.IG.I.GK.GKT.FTI.NVT...IVLAD. | |
Retrocopy | VLVLIRFEDFWLESFEITDVKPIKGDHLSRTIGKIVGKEGKTSFTIQNVTQSCIVLADM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003256 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006564 | 3 retrocopies | |
Felis catus | ENSFCAG00000025330 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000000046 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010897 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010850 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017461 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009993 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006100 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016637 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012353 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005524 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008352 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000004007 | 1 retrocopy |
retro_tsyr_1625 ,
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