RetrogeneDB ID: | retro_cfam_2146 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:35839087..35839684(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VDAC3 | ||
Ensembl ID: | ENSCAFG00000005502 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris voltage-dependent anion channel 3 (VDAC3), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001251965] |
Percent Identity: | 85.43 % |
Parental protein coverage: | 68.38 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EYSPIFEEMCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTSGHAYTDTGKASGNLETKY |
E..P....MCN..TY.DLGK.AKDVFN.GYGF..VK.DLRTKSCS.VE.STS.HAYTDTGKASGNLETKY | |
Retrocopy | ESGPLIGYMCNALTYRDLGKTAKDVFNEGYGFRVVKRDLRTKSCSRVELSTSSHAYTDTGKASGNLETKY |
Parental | KVCNYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKRDCFSVGSNVDID |
KVCNY.LTFTQKWNTDNT..T.ISLENKLAE.LK.TLDTIFVPNTGKKSGKLKASYKRDCFS.GSNV..D | |
Retrocopy | KVCNYRLTFTQKWNTDNTPATKISLENKLAEELKQTLDTIFVPNTGKKSGKLKASYKRDCFSLGSNVGRD |
Parental | FSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQLHTHVNDGTEFG |
FSG..IYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQLHTHVND.TEFG | |
Retrocopy | FSGSSIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQLHTHVNDDTEFG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 70 .43 RPM |
SRP017611_brain | 0 .00 RPM | 47 .32 RPM |
SRP017611_kidney | 0 .00 RPM | 69 .80 RPM |
SRP017611_liver | 0 .00 RPM | 20 .01 RPM |