RetrogeneDB ID: | retro_tbel_1801 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5770:70040..70507(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VDAC3 | ||
Ensembl ID: | ENSTBEG00000007420 | ||
Aliases: | None | ||
Description: | voltage-dependent anion channel 3 [Source:HGNC Symbol;Acc:12674] |
Percent Identity: | 55.97 % |
Parental protein coverage: | 56.03 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | GSNVDIDFSG-PTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQLHTHVNDGTEFGGSI |
G...D.D..G.P...G..VL..EG...G.QM......S...Q.NF..GYK...FQLHT.VNDGTEFGGSI | |
Retrocopy | GCTLDFDTVG<PSTWGALVLG*EGCMDGHQMNLENVTS*VKQSNFMVGYKTDEFQLHTKVNDGTEFGGSI |
Parental | YQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNNASLIGLGYTQTLRPGVKLTLSALID |
.QKVN...ET..NLAWTAG..NTRFGI.AKY..D......A...N.SLIGLGYTQT.....KLTLS...D | |
Retrocopy | CQKVNKNLETAVNLAWTAGNSNTRFGIMAKYQIDTDACFLA*I-NPSLIGLGYTQTIKALIKLTLSVSSD |
Parental | GKNFNAGGHKVGLGFELEA |
.KN.N.GGHK.GLG.E..A | |
Retrocopy | -KNINTGGHKLGLGLEFQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |