RetrogeneDB ID: | retro_ggor_1071 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 14:81888146..81888928(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VDAC3 | ||
Ensembl ID: | ENSGGOG00000001932 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.5 % |
Parental protein coverage: | 92.61 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVMEFSTSGHAYTDTGKASGNLETKYKVCNYGL |
MCNTPTY.DLGKAA.DVFNKGYGFGM.KIDLKTKSCS.V.EFSTSGHAYTDTGKASGNLE...KVCNYGL | |
Retrocopy | MCNTPTYRDLGKAAEDVFNKGYGFGMGKIDLKTKSCSAV-EFSTSGHAYTDTGKASGNLEPERKVCNYGL |
Parental | TFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKRDCFSVGSNVDIDFSGPTIY |
TFTQK.NTDNTLGTEIS.ENKLA.GLKL.LDTI.VPNTG.KSG.LKASYK.DCFSVGSNVD.DFS.PTIY | |
Retrocopy | TFTQKRNTDNTLGTEISLENKLAKGLKLSLDTILVPNTGEKSGELKASYKWDCFSVGSNVDLDFSRPTIY |
Parental | GWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQLHTHVNDGTEFGGSIYQKVNEKIETSINLA |
GWAVL.FEGWLAGYQMSFDTAKSKLSQNNFALG..AADFQLHTHVNDGTEFGGSIYQKVN..IE.SINLA | |
Retrocopy | GWAVLVFEGWLAGYQMSFDTAKSKLSQNNFALG*EAADFQLHTHVNDGTEFGGSIYQKVN-GIEMSINLA |
Parental | WTAG-SNNTRFGIAAKYMLDCRTSLSAKVNNASLIGLGYTQTLRPGVKLTLSAL |
WTAG.SNN..FG.A.KY.LDCRTSLSAKVNNASLIGLGYTQTLRP.VKLTL..L | |
Retrocopy | WTAG<SNNPHFGTATKYKLDCRTSLSAKVNNASLIGLGYTQTLRPRVKLTLYQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 121 .04 RPM |
SRP007412_cerebellum | 0 .04 RPM | 98 .46 RPM |
SRP007412_heart | 0 .06 RPM | 64 .63 RPM |
SRP007412_kidney | 0 .08 RPM | 66 .57 RPM |
SRP007412_liver | 0 .03 RPM | 47 .19 RPM |
SRP007412_testis | 0 .41 RPM | 121 .94 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1375 |
Pan troglodytes | retro_ptro_945 |
Pongo abelii | retro_pabe_1145 |
Macaca mulatta | retro_mmul_2200 |