RetrogeneDB ID: | retro_cfam_258 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:47297661..47298114(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000000624 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VDAC3 | ||
Ensembl ID: | ENSCAFG00000005502 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris voltage-dependent anion channel 3 (VDAC3), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001251965] |
Percent Identity: | 91.39 % |
Parental protein coverage: | 51.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EYSPIFEEMCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTSGHAYTDTGKASGNLETKY |
E..P...EMCNT.TYCDLGKAAKDVFNKGY.F.MVKIDLRTKSCSGVEFSTSGHAYTDTG.ASGNLETKY | |
Retrocopy | ETGPLIGEMCNTLTYCDLGKAAKDVFNKGYRFSMVKIDLRTKSCSGVEFSTSGHAYTDTGNASGNLETKY |
Parental | KVCNYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKRDCFSVGSNVDID |
KVCN.GLTFTQKWNTDNTLGT.ISLENKLAEGLKLTLDTIFV.NTGKKSGKLKASYKRDCFSVGSNVDID | |
Retrocopy | KVCNSGLTFTQKWNTDNTLGTKISLENKLAEGLKLTLDTIFVSNTGKKSGKLKASYKRDCFSVGSNVDID |
Parental | FSGPTIYGWAV |
FSGP.IYGWAV | |
Retrocopy | FSGPIIYGWAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 70 .43 RPM |
SRP017611_brain | 0 .00 RPM | 47 .32 RPM |
SRP017611_kidney | 0 .00 RPM | 69 .80 RPM |
SRP017611_liver | 0 .00 RPM | 20 .01 RPM |