RetrogeneDB ID: | retro_cfam_2178 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:67191519..67192254(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZDHHC6 | ||
Ensembl ID: | ENSCAFG00000010960 | ||
Aliases: | None | ||
Description: | zinc finger, DHHC-type containing 6 [Source:HGNC Symbol;Acc:19160] |
Percent Identity: | 89.8 % |
Parental protein coverage: | 57.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDTFCSVIKFENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIMLINWTVMILY |
MDTFCSVIKFENLQELKRLCHWGPIIALGVIA.CSTMAMIDSVLWYWPLHTTGGSVNFIMLINWTVMILY | |
Retrocopy | MDTFCSVIKFENLQELKRLCHWGPIIALGVIAVCSTMAMIDSVLWYWPLHTTGGSVNFIMLINWTVMILY |
Parental | NYFNAMFIGPGFVPLGWKPENSQD----SMYLQYCKVC---QAYKAPRSHHCRKCNRCVMKMDHHCPWIN |
NYFNAMFIGPGFVPLGWKPENSQD.........Y...C...QAYKAPRSHHC.KCNRCVMKMDHHCPWI. | |
Retrocopy | NYFNAMFIGPGFVPLGWKPENSQDREDVPLWRMYLQYCKVCQAYKAPRSHHCIKCNRCVMKMDHHCPWIS |
Parental | NCCGYQNHASFTLFLLLAPLGCIHAAFIFVMTMYTQLYNRLSFGWNTVKIDMSAARRDPLPIIPFGLAAF |
N.CGYQNHASFTLFLLLAPLGCIH.AFIFVMTMYTQL.NRLSFGWNTVKIDMSA.RRDPLPIIPFGLAAF | |
Retrocopy | NSCGYQNHASFTLFLLLAPLGCIHSAFIFVMTMYTQLHNRLSFGWNTVKIDMSASRRDPLPIIPFGLAAF |
Parental | AATLFALGLALGTTIAVGMLFFIQMKIILRNKTSI |
AATLFALGLALGTTIAVGMLFFIQMKIILRN..S. | |
Retrocopy | AATLFALGLALGTTIAVGMLFFIQMKIILRNNISL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 26 .04 RPM |
SRP017611_brain | 0 .00 RPM | 17 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 36 .19 RPM |
SRP017611_liver | 0 .00 RPM | 9 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015401 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000010960 | 1 retrocopy |
retro_cfam_2178 ,
|
Choloepus hoffmanni | ENSCHOG00000012828 | 1 retrocopy | |
Felis catus | ENSFCAG00000030784 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008129 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002043 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024982 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000030535 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013840 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009673 | 2 retrocopies |