RetrogeneDB ID: | retro_tsyr_1653 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_531895:121..1005(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZDHHC6 | ||
Ensembl ID: | ENSTSYG00000009673 | ||
Aliases: | None | ||
Description: | zinc finger, DHHC-type containing 6 [Source:HGNC Symbol;Acc:19160] |
Percent Identity: | 93.27 % |
Parental protein coverage: | 71.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | NRCVMKMDHHCPWINNCCGYQNHASFTLFLLLAP-LGCIHAAFIFVMTMYTQLYNRLSFGWNTVRIDMNA |
NRCVMKM.HHCPWINNCC.YQNHASFTLFLLLAP.LGCIHAAFIFVMTMYTQLYN..SFGWNTVRIDMNA | |
Retrocopy | NRCVMKMVHHCPWINNCC-YQNHASFTLFLLLAP>LGCIHAAFIFVMTMYTQLYNQPSFGWNTVRIDMNA |
Parental | AQRDPLPIFPFGLAAFAATLFALGLALGTTIAVGMLFFIQMKIILRNKTSIESWIEEKAKDRIQYYQLDE |
AQRD.LP.FPFGLAAFA.TLFALGLALGTTIAVGMLFFIQMKIILRNK.SIESWIEEKAKDRIQYYQLDE | |
Retrocopy | AQRDSLPVFPFGLAAFAVTLFALGLALGTTIAVGMLFFIQMKIILRNKISIESWIEEKAKDRIQYYQLDE |
Parental | VFVFPYDMGSRWRNFKQVFTWSGVPEGDGLEWPIREGCHQYSLTIEQLKQKADKRVRSVRYKVIEDYSGA |
VFVFPYDMGSRWRNFKQ.F.WSGVPEGDGLEWPIREGCHQYSLTIEQLKQKADKRVRSV.YKVIEDYSG. | |
Retrocopy | VFVFPYDMGSRWRNFKQIFMWSGVPEGDGLEWPIREGCHQYSLTIEQLKQKADKRVRSVCYKVIEDYSGD |
Parental | CCPLNKGIKTFFTSPCTEEPRIQLQ-KGEFILATRGLRYWLYGDKILDDSSVEGVSRIRGWFPRNCVEKC |
CCPLNKGIKTFFTSPCTEEP.I.LQ.KGEFILATRGLRYWLYGDKILDDSSVE..SRIRGWFPRNCVEKC | |
Retrocopy | CCPLNKGIKTFFTSPCTEEPEI*LQ>KGEFILATRGLRYWLYGDKILDDSSVEDISRIRGWFPRNCVEKC |
Parental | PCDVETDQALEGEKKNR |
PCDVETDQA.EG.KKNR | |
Retrocopy | PCDVETDQAPEGKKKNR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015401 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000010960 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012828 | 1 retrocopy | |
Felis catus | ENSFCAG00000030784 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008129 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002043 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024982 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000030535 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013840 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009673 | 2 retrocopies |
retro_tsyr_1653 , retro_tsyr_1771,
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