RetrogeneDB ID: | retro_itri_308 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393283.1:8585167..8586090(-) | ||
Located in intron of: | ENSSTOG00000003112 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZDHHC6 | ||
Ensembl ID: | ENSSTOG00000013840 | ||
Aliases: | None | ||
Description: | zinc finger, DHHC-type containing 6 [Source:HGNC Symbol;Acc:19160] |
Percent Identity: | 64.13 % |
Parental protein coverage: | 75.06 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | VCQAYKAPRSHHCRKCNRCVMKMDHHCPWINNCCGYQNHASFTLFLLLAPLGCIHAAFIFVMTMYTQL-Y |
VCQ.YKAP...H.R.CNRC.MKMDHH.PWINNCCGYQNHA.F....L.APL..IHAAFIFV.T.Y.QL.Y | |
Retrocopy | VCQTYKAPSLYHFRTCNRCLMKMDHHHPWINNCCGYQNHALFIXXXL*APLCFIHAAFIFVITVYIQL<Y |
Parental | NRLSFGWNTVKIDMSAARRDPLPIVPFGLAAFAATLFALGLALGTTIAVGMLFFIQMKIILRNKTSIESW |
N.LSF.W.TVKI.MSAA.R.PLP.VPF.L.AFAATLFALGL.L.TTIA.....FIQ.............. | |
Retrocopy | NWLSFEWKTVKIEMSAAQRVPLPVVPFELVAFAATLFALGLTLETTIAIRIVVFIQVXXXX*KQNILNHG |
Parental | IEEKAK-DRIQYYQLDEV-FVFPYDMGSKWKNFTQVFTWSGVPEGDGLEWPVREDCHPYSLTIEQLKQKA |
.....K.D.IQYYQLD.V.FVFPYD..S.WKNF..VFT.S.VPE...LEWP.REDC..YSL.IEQ.KQKA | |
Retrocopy | LKKRLK<DQIQYYQLDAV>FVFPYDVESSWKNFKKVFT*SRVPENE-LEWPIREDCCHYSLIIEQWKQKA |
Parental | DKRVRSVRYKVTEDYSGSCCPLNKGIKTIFTIPCTEEPRIQLRK--GEFILATRGLRYWLYGDKILDDSF |
..RVRSV.YKV.EDYS...CPLNK..K.I..I..TE.P.IQL.K....FILAT.GL...L.GD.IL.DSF | |
Retrocopy | YERVRSVCYKVIEDYSHAYCPLNK*NK-IIIIFYTENPQIQLQKKGSSFILAT-GL*CCLCGDRILGDSF |
Parental | AEGVSRIRGWFPRKCVEKCPCEAETDPAPEGEKKN |
...V.RIRGWFPR..VEKCPC.AE.D.APE..KKN | |
Retrocopy | VD-VPRIRGWFPRNHVEKCPCHAEADLAPEDNKKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015401 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000010960 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012828 | 1 retrocopy | |
Felis catus | ENSFCAG00000030784 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008129 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002043 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024982 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000030535 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013840 | 1 retrocopy |
retro_itri_308 ,
|
Tarsius syrichta | ENSTSYG00000009673 | 2 retrocopies |