RetrogeneDB ID: | retro_mputfur_668 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896933.1:8742090..8742741(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZDHHC6 | ||
Ensembl ID: | ENSMPUG00000002043 | ||
Aliases: | None | ||
Description: | zinc finger, DHHC-type containing 6 [Source:HGNC Symbol;Acc:19160] |
Percent Identity: | 68.16 % |
Parental protein coverage: | 52.3 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | QYCKVCQAYKAPRSHHCRKCNRCVMKMDHHCPWINNCCGYQNHASFTLFLLL-APLGCIHAAFIFVMTMY |
Q..K..QAYKA....HCR..NRCV.KM.H..PW.NNC.G.QNHAS.TLFLL...PLGCIHAAFIFVMTM. | |
Retrocopy | QDSKARQAYKAL*LRHCRRSNRCVIKMYHWSPWMNNCYGSQNHASSTLFLLE<EPLGCIHAAFIFVMTMF |
Parental | TQLYNRLSFGWNTVKIDMSAARRDPL----PIIPFGLAAFAATLFALGLALGTTIAVGMLFFIQMKIILR |
TQLY..LSFG.N..KIDM.AA.RDPL....PIIPF..AA.A.TLFA..L.LGTTIAVGMLF..QMK.I.. | |
Retrocopy | TQLYSWLSFGRNMLKIDMNAAWRDPLQGSSPIIPFK*AALAVTLFA*RLTLGTTIAVGMLFCNQMKTIFT |
Parental | NKTSIESWIEEKAKDRIQYYQLDEVFVFPYDM-GSRWKNFKQVFTWSG-VPEGDGLAWPVRKDCHPYSLT |
N.TS.ES.....AKD..QYYQLDE..V.PYDM.GSRWKNFK.VFTWSG.VPEGDGL.WP....CH...LT | |
Retrocopy | NETSVES*VXXXAKDQFQYYQLDE--VLPYDM<GSRWKNFKWVFTWSG<VPEGDGLEWPITEGCHQ*NLT |
Parental | IEQLKQKADKRVR |
.EQL.QK.DKRVR | |
Retrocopy | VEQLRQKTDKRVR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015401 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000010960 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012828 | 1 retrocopy | |
Felis catus | ENSFCAG00000030784 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008129 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002043 | 1 retrocopy |
retro_mputfur_668 ,
|
Mus musculus | ENSMUSG00000024982 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000030535 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013840 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009673 | 2 retrocopies |