RetrogeneDB ID: | retro_cfam_285 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:117807396..117808106(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GLRX3 | ||
Ensembl ID: | ENSCAFG00000013280 | ||
Aliases: | GLRX3, TXNL2 | ||
Description: | glutaredoxin 3 [Source:HGNC Symbol;Acc:15987] |
Percent Identity: | 61.38 % |
Parental protein coverage: | 72.07 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | VPTFLLFKNSQKIDRLDGAHAPELTKKVQRHAS-SGSFPPSTNEHPKEDLHVR-LKKLTHAAPCMLFMKG |
VPTFL.FKNSQK.DRLD.AH..EL..KVQ.HAS..GSF.P........D.....LKK.T.AAPC.LFM.G | |
Retrocopy | VPTFLFFKNSQKTDRLDDAHTQELIQKVQGHAS>GGSF-PPSGRKDPKDVNQA<LKKFTQAAPCRLFMTG |
Parental | TPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTYSNW-PTYPQLYVSGELIGGLDIIKELEA |
T.QEP..GFSKQM..ILN.HN..FS.FDI.S.EEV.Q.LKTYSNW.P..P...V.GEL.GGLD.IK..E. | |
Retrocopy | TLQEPCGGFSKQMADILNEHNFWFSRFDILSGEEVHQVLKTYSNW>PSIPSS-VHGELRGGLD*IKDPET |
Parental | SDELDTICPKAPKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETF-DILEDE-EV |
S.ELDTIC..APKLEER.KVLTNKASVM.......Q.AKC.FS.QI.EILNST.V.YETF.DILE...E. | |
Retrocopy | SEELDTICLHAPKLEERSKVLTNKASVMK-CNEKQQKAKCAFS*QIPEILNSTSVDYETFDDILENK<EF |
Parental | RQGLKTYSNWPTYPQLYVKG-ELVGGLDIVKELKDN |
R..LKT.....T......KG.ELVG...I.K.LK.N | |
Retrocopy | R*QLKTQIGQHTLSCMW-KG<ELVG*VRIIKKLKEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 56 .87 RPM |
SRP017611_brain | 0 .16 RPM | 33 .58 RPM |
SRP017611_kidney | 0 .00 RPM | 122 .43 RPM |
SRP017611_liver | 0 .00 RPM | 25 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003257 | 1 retrocopy | |
Bos taurus | ENSBTAG00000005027 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013280 | 1 retrocopy |
retro_cfam_285 ,
|
Callithrix jacchus | ENSCJAG00000014400 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010387 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010771 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000008544 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000005483 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031068 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000027088 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000017309 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002768 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003060 | 1 retrocopy |