RetrogeneDB ID: | retro_dnov_2110 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_48736:3398..3995(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GLRX3 | ||
Ensembl ID: | ENSDNOG00000010387 | ||
Aliases: | None | ||
Description: | glutaredoxin 3 [Source:HGNC Symbol;Acc:15987] |
Percent Identity: | 80.4 % |
Parental protein coverage: | 63.99 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GAAAVEVGSAREFEELLRLKARSLLVVHFWAPWAPQCVQMNDVMVELAKEHPQVSFVKLEAEAVPEVSEK |
G....EVGS.RE.EELL.LKARSLLV.HF.AP.APQCVQ..DV.VELAKEHPQVSF.KL.AEAVPEVSE. | |
Retrocopy | GGGGGEVGSGRECEELLLLKARSLLVAHFGAPRAPQCVQTTDVTVELAKEHPQVSFTKLKAEAVPEVSER |
Parental | YEISSVPTFLFFKNSQKIDRLDGAHAPELTKRVQRHASSGSFAPAMNEHPKEELNLRLKKLTNAAPCMLF |
YEISSVPTFLFFKNSQKIDRLDGA.APELTKRVQRHA.SGS.A...NEHP.E..NLRLKKLTNAAPCM.F | |
Retrocopy | YEISSVPTFLFFKNSQKIDRLDGAPAPELTKRVQRHAPSGSLASDLNEHPREDFNLRLKKLTNAAPCMQF |
Parental | MKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTYSNWPTYPQLYVSGE |
MKG.PQ..RCG.SKQ.VEILNKHNIQFSS.D.FSDEEVRQGLKTYS.WPTYP....S.E | |
Retrocopy | MKGAPQQARCGSSKQRVEILNKHNIQFSSCDSFSDEEVRQGLKTYSSWPTYPLSCMSPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 44 .53 RPM |
SRP012922_cerebellum | 0 .00 RPM | 45 .50 RPM |
SRP012922_heart | 0 .00 RPM | 65 .43 RPM |
SRP012922_kidney | 0 .00 RPM | 38 .88 RPM |
SRP012922_liver | 0 .00 RPM | 20 .59 RPM |
SRP012922_lung | 0 .00 RPM | 47 .34 RPM |
SRP012922_quadricep_muscle | 0 .17 RPM | 69 .06 RPM |
SRP012922_spleen | 0 .00 RPM | 45 .33 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003257 | 1 retrocopy | |
Bos taurus | ENSBTAG00000005027 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013280 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014400 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010387 | 1 retrocopy |
retro_dnov_2110 ,
|
Gorilla gorilla | ENSGGOG00000010771 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000008544 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000005483 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031068 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000027088 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000017309 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002768 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003060 | 1 retrocopy |