RetrogeneDB ID: | retro_pabe_2830 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:4017639..4018524(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GLRX3 | ||
Ensembl ID: | ENSPPYG00000002768 | ||
Aliases: | None | ||
Description: | glutaredoxin 3 [Source:HGNC Symbol;Acc:15987] |
Percent Identity: | 90.85 % |
Parental protein coverage: | 88.06 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | PWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTK |
P..PQCAQMNEVMAELAKE.PQVSFVKLEAEGVPEVSEKYEISSVPTFLFF.NSQKIDRLDGAH.PELTK | |
Retrocopy | PCGPQCAQMNEVMAELAKERPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFNNSQKIDRLDGAHIPELTK |
Parental | KVQRHASSGSFLPSANEHLKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFD |
KVQ.HAS.GSF.PS.NEHLKED.NLR.KKLTHAAPCM.FMKGTPQEP.CGFSKQ.VEI.HKHNI.FSSFD | |
Retrocopy | KVQ*HASTGSFPPSTNEHLKEDRNLR*KKLTHAAPCMPFMKGTPQEPLCGFSKQLVEIRHKHNI*FSSFD |
Parental | IFSDEEVRQGLKAYSNWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLEERLKVLTNKASVML |
.FSDE.VRQGL.AYSNWPTYPQLYVSGELIGGLDIIKEL.ASEELDTICPKAPKLEERLKVLTN.ASVML | |
Retrocopy | AFSDEDVRQGLEAYSNWPTYPQLYVSGELIGGLDIIKELQASEELDTICPKAPKLEERLKVLTNEASVML |
Parental | FMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKE |
F.KGNKQEAKCGFSKQIL.ILNSTG.EYE.FDI.EDE.VRQGLKAYSNWPTYPQLYVKGELVGGLDIVKE | |
Retrocopy | FKKGNKQEAKCGFSKQIL*ILNSTGGEYEIFDIVEDEGVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKE |
Parental | LKENGELLPILRGEN |
LKENGELLPILRGEN | |
Retrocopy | LKENGELLPILRGEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 14 .76 RPM |
SRP007412_cerebellum | 0 .24 RPM | 19 .21 RPM |
SRP007412_heart | 0 .06 RPM | 14 .69 RPM |
SRP007412_kidney | 0 .03 RPM | 17 .67 RPM |
SRP007412_liver | 0 .03 RPM | 20 .72 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003257 | 1 retrocopy | |
Bos taurus | ENSBTAG00000005027 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013280 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014400 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010387 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010771 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000008544 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000005483 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031068 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000027088 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000017309 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002768 | 1 retrocopy |
retro_pabe_2830 ,
|
Pan troglodytes | ENSPTRG00000003060 | 1 retrocopy |