RetrogeneDB ID: | retro_mmur_89 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_1189:51952..52375(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GLRX3 | ||
Ensembl ID: | ENSMICG00000008544 | ||
Aliases: | None | ||
Description: | glutaredoxin 3 [Source:HGNC Symbol;Acc:15987] |
Percent Identity: | 73.47 % |
Parental protein coverage: | 53.36 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KTYSNWPTYPQLYVSGELIGGLDII--KELEASQELETVCP-KAPKLEERLKVLTNKASVMLFMKGNKQE |
..Y.NW.TYPQL.VSGELIG.L.I...KELEAS.EL.T.CP.KAPKL.E.LKVLTN..SVM.F.K.NKQE | |
Retrocopy | ENYCNWSTYPQLSVSGELIGRLVILTTKELEASEELHTICP>KAPKLHEKLKVLTN*VSVMPFKKRNKQE |
Parental | AKCGFSRQILEILNTTGVEYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELVGGLDIVKELKEN-GEL |
AKCGFS.QILEIL...GVE.E...ILE.EEV.QGLK.YSNWPT.PQLYVKGE..GGLDIVKELK.N..EL | |
Retrocopy | AKCGFS*QILEILSS-GVEHE---ILEAEEVQQGLKAYSNWPTHPQLYVKGEVAGGLDIVKELKIN<CEL |
Parental | LPILRGE |
LPILR.E | |
Retrocopy | LPILREE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003257 | 1 retrocopy | |
Bos taurus | ENSBTAG00000005027 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013280 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014400 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010387 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010771 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000008544 | 2 retrocopies |
retro_mmur_1394, retro_mmur_89 ,
|
Myotis lucifugus | ENSMLUG00000005483 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031068 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000027088 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000017309 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002768 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003060 | 1 retrocopy |