RetrogeneDB ID: | retro_cfam_525 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 12:46833980..46834712(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000002351 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CLIC1 | ||
Ensembl ID: | ENSCAFG00000000621 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris chloride intracellular channel 1 (CLIC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001252138] |
Percent Identity: | 94.69 % |
Parental protein coverage: | 97.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PVATMAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPF |
PVATMAEEQP.VELF.KAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQ.LCPGGQLPF | |
Retrocopy | PVATMAEEQPRVELFLKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQTLCPGGQLPF |
Parental | LLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKA |
L.Y.TEVHTDT.KIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKN.NPALNDNLEKGL.KA | |
Retrocopy | LRYRTEVHTDT-KIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNPNPALNDNLEKGLPKA |
Parental | LKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFSIPEVFRGV |
L.VLDNYLTSPLPEEVDET.AEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKK.RGFSIPEVFRGV | |
Retrocopy | LRVLDNYLTSPLPEEVDETRAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKSRGFSIPEVFRGV |
Parental | HRYLRNAYAREEFASTCPDDEEIELAYEQVAKALK |
HRYLRNA.AREEFASTCPDDEEIELA.EQVAKALK | |
Retrocopy | HRYLRNACAREEFASTCPDDEEIELACEQVAKALK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 19 .45 RPM |
SRP017611_brain | 0 .08 RPM | 8 .34 RPM |
SRP017611_kidney | 0 .00 RPM | 60 .62 RPM |
SRP017611_liver | 0 .00 RPM | 11 .53 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000621 | 2 retrocopies |
retro_cfam_481, retro_cfam_525 ,
|
Callithrix jacchus | ENSCJAG00000002788 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000016424 | 3 retrocopies | |
Felis catus | ENSFCAG00000019049 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011331 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015201 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000029827 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000015240 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006264 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022545 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000031840 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000013268 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016456 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017982 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006493 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001540 | 2 retrocopies |