RetrogeneDB ID: | retro_ocun_1449 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 8:49121621..49122349(-) | ||
Located in intron of: | ENSOCUG00000015173 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000024639 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CLIC1 | ||
Ensembl ID: | ENSOCUG00000022545 | ||
Aliases: | None | ||
Description: | chloride intracellular channel 1 (CLIC1), mRNA [Source:RefSeq mRNA;Acc:NM_001082111] |
Percent Identity: | 91.8 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLW-LKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLY |
MAEEQPQVELFVK.GSDGAKI..CPFSQRLFMVLW.LKGVTFNVTTVDTK..TETVQKLCPGGQLPFLLY | |
Retrocopy | MAEEQPQVELFVKSGSDGAKIRSCPFSQRLFMVLW>LKGVTFNVTTVDTKKWTETVQKLCPGGQLPFLLY |
Parental | GTEVHTDTNK-IEEFLEAVLCPPRYPKLAALNPESNTAGVDIFAKFSAYIKNSNPALNDNLEKGLLKALK |
GTEVHTD.NK.IEEFLEAVLCPP.YP.LAALNPESNTAGVDIFAKFSAYIKNSNP.LNDNLEKGLLKALK | |
Retrocopy | GTEVHTDINK>IEEFLEAVLCPPKYPELAALNPESNTAGVDIFAKFSAYIKNSNPVLNDNLEKGLLKALK |
Parental | ILDNYLTSP-LPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEVFRGVH |
ILDNYLT.P..PEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEVF.G.H | |
Retrocopy | ILDNYLTPPPAPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEVFQGMH |
Parental | RYLSNAYAREEFASTCPDDEEIELAYEQVAKALK |
RYLSNAYAREEF.STCPDDEEIELA..Q.AKALK | |
Retrocopy | RYLSNAYAREEFVSTCPDDEEIELACDQMAKALK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .17 RPM | 19 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 79 .87 RPM |
SRP017611_liver | 0 .15 RPM | 31 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000621 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000002788 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000016424 | 3 retrocopies | |
Felis catus | ENSFCAG00000019049 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011331 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015201 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000029827 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000015240 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006264 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022545 | 1 retrocopy |
retro_ocun_1449 ,
|
Otolemur garnettii | ENSOGAG00000031840 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000013268 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016456 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017982 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006493 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001540 | 2 retrocopies |