RetrogeneDB ID: | retro_fcat_1301 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:123488994..123489403(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CLIC1 | ||
Ensembl ID: | ENSFCAG00000019049 | ||
Aliases: | None | ||
Description: | chloride intracellular channel 1 [Source:HGNC Symbol;Acc:2062] |
Percent Identity: | 84.17 % |
Parental protein coverage: | 56.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AEEQPQVELFVKAGSDGAKIGNCPFS-QRLFMVLWLKGVTFNVTTVDTKRRTETVQKLC-PGGQLPFLLY |
AEEQPQ.ELF.KAGSDGAK.GNC.F..QRLFMVLWLKGV.FNVTTVDTKR.TET.QK...PGG.LP.L.Y | |
Retrocopy | AEEQPQFELFMKAGSDGAKPGNCAFP<QRLFMVLWLKGVPFNVTTVDTKRLTETIQKMS<PGGWLPVLPY |
Parental | GTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALK |
GTEVHTDTNK.EEFLE.VLCPPRYPKLAALNP.SNTAGLDIFA.FSAYI.NSNPALN.NLEKGLLKAL. | |
Retrocopy | GTEVHTDTNKTEEFLEVVLCPPRYPKLAALNPGSNTAGLDIFARFSAYIENSNPALNENLEKGLLKALR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 3 .79 RPM |
SRP017611_kidney | 0 .00 RPM | 42 .98 RPM |
SRP017611_liver | 0 .00 RPM | 7 .48 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000621 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000002788 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000016424 | 3 retrocopies | |
Felis catus | ENSFCAG00000019049 | 1 retrocopy |
retro_fcat_1301 ,
|
Gorilla gorilla | ENSGGOG00000011331 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015201 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000029827 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000015240 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006264 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022545 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000031840 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000013268 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016456 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017982 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006493 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001540 | 2 retrocopies |