Parental gene:

CLIC1, ENSPPYG00000016456

Aliases:None
Description:chloride intracellular channel 1 [Source:HGNC Symbol;Acc:2062]
Organism:Orangutan (Pongo abelii)
Coordinates:6:32230560..32236469(-)


>ENSPPYG00000016456
ATGGCTGAAGAACAACCGCAGGTCGAATTGTTCGTGAAGGCGGGCAGTGATGGGGCCAAAATTGGGAACTGCCCATTCTC
CCAGAGACTGTTCATGGTACTGTGGCTCAAGGGAGTCACCTTCAATGTTACCACCGTTGACACCAAAAGGCGGACCGAGA
CAGTGCAGAAGCTGTGCCCAGGGGGGCAGCTCCCATTCCTGCTGTATGGCACTGAAGTGCACACAGACACCAACAAGATT
GAGGAATTTCTGGAGGCAGTACTGTGCCCTCCCAGGTACCCCAAGCTGGCAGCTCTGAACCCTGAGTCCAACACAGCTGG
GCTGGACATATTTGCCAAATTTTCTGCCTACATCAAGAATTCAAACCCAGCACTCAATGATAATCTGGAGAAGGGACTCC
TGAAAGCCCTGAAGGTTTTAGACAATTACTTAACATCCCCCCTCCCAGAAGAAGTGGATGAAACCAGTGCTGAAGATGAA
GGTGTCTCTCAGAGGAAGTTTCTGGATGGCAACGAGCTCACCCTGGCTGACTGCAACCTGTTGCCAAAGTTACACATAGT
ACAGGTGGTGTGTAAGAAGTACCGGGGATTCACCATCCCCGAGGCCTTCCGGGGAGTGCATCGGTACTTGCGCAATGCCT
ACGCCCGGGAAGAATTCGCTTCCACCTGTCCAGATGATGAGGAGATCGAGCTCGCCTATGAGCAAGTGGCCAAGGCCCTC
AAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 15 .43 RPM
SRP007412_cerebellum 8 .39 RPM
SRP007412_heart 23 .99 RPM
SRP007412_kidney 79 .98 RPM
SRP007412_liver 50 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000000621 ortholog_one2many 2 retrogenes
retro_cfam_481, retro_cfam_525,
Callithrix jacchus ENSCJAG00000002788 ortholog_one2one 1 retrogene
retro_cjac_2972,
Dipodomys ordii ENSDORG00000016424 ortholog_one2one 3 retrogenes
retro_dord_506, retro_dord_524, retro_dord_550,
Felis catus ENSFCAG00000019049 ortholog_one2one 1 retrogene
retro_fcat_1301,
Gorilla gorilla ENSGGOG00000011331 ortholog_one2one 1 retrogene
retro_ggor_2153,
Macropus eugenii ENSMEUG00000015201 ortholog_one2one 1 retrogene
retro_meug_254,
Macaca mulatta ENSMMUG00000029827 ortholog_one2many 3 retrogenes
retro_mmul_1269, retro_mmul_290, retro_mmul_902,
Monodelphis domestica ENSMODG00000015240 ortholog_one2one 1 retrogene
retro_mdom_1166,
Nomascus leucogenys ENSNLEG00000006264 ortholog_one2one 3 retrogenes
retro_nleu_1296, retro_nleu_24, retro_nleu_2894,
Oryctolagus cuniculus ENSOCUG00000022545 ortholog_one2one 1 retrogene
retro_ocun_1449,
Otolemur garnettii ENSOGAG00000031840 ortholog_one2one 4 retrogenes
retro_ogar_2402, retro_ogar_3273, retro_ogar_407, retro_ogar_982,
Procavia capensis ENSPCAG00000013268 ortholog_one2one 1 retrogene
retro_pcap_30,
Pongo abelii ENSPPYG00000001715 within_species_paralog 3 retrogenes
retro_pabe_219, retro_pabe_3466, retro_pabe_3632,
Pan troglodytes ENSPTRG00000017982 ortholog_one2one 2 retrogenes
retro_ptro_1238, retro_ptro_724,
Sarcophilus harrisii ENSSHAG00000006493 ortholog_one2many 1 retrogene
retro_shar_28,
Tarsius syrichta ENSTSYG00000001540 ortholog_one2one 2 retrogenes
retro_tsyr_1452, retro_tsyr_722,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_886 85.42 99.59
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2. retro_pabe_1514 86.22 81.33
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Download FASTA sequences of all ENSPPYG00000016456 retrocopies