>retro_cfam_590
GGAAAAGGGAAGCATTTTAAAAAGTGAAGAACAAAGCCAGCGCAGATCTGCTTCAGCAACATCTCTGCGGCCAAAGCTGT
TGCTGATGCTATTAGAACAAGCCTTGGAGCAAAAGGAATGGATAAAATGATTCAAGATGGAAAAGGTGATGTGACCATTA
CAAATGATGGTGCCACCATTCTTAAACAAATGCAAGTGTTACATCCAGCAGCCAGAATGCTGGTGGAGCTGTCTAAGGCA
CAAGATATAGAAGCAGGAGATGGCACCACACCAGTGGTCTTCATTGCTGGCTCTCTCTTAGATTCCTGTACCAAGCTTCT
TCAGAAAGGGATTCATCCAACCATCATTTCTGAGTCATTCCAGAAGGCTTTAGAAAAGGGTATAGAAATCTTGACTGACA
TGTCTCGACCTGTGGAACTCAGTGACAGAGAAACTGTATTAAATAGTGCTACCACTTCCTTGAACTCAAAGGTTGTGTCT
CAGTATTCAAGTCTGCTTTCTCCAATGAGTGTAAATGCAGCGATGAAAGTGACTGACCCAGCCACGGCTACTAGTGTAGA
TCTTAGAGAGATTGAAATAGTTAAGAAACTTGGTGGGACAATTGATGACTGTGAGCTGGTAGAAGGGCTGGTACTTACTC
AGAAGGTGGCAAATTCTGGCATAACCAGAGTTGAAAAGGCTAAGATTGGGCTTATTCAGTTTTGCTTATCTGCTCCCAAA
ATGGATATGGATAATCAAATTGTAGTTTCTGACTATGTCCAGATGGATCGAGTGCTTCGGGAGGAGAGAGCCTATATTCT
CAATTTAGTGAAGCAAATTTAAAAAACAGGATGTAATGTCCTCTTCATACAGAAGTCTATCCTGAGAGATGCTCTTAGTG
ATCTTGCATTACATTTCCTCAACAAGATGAAGATTATGGTGGTTAAGGATATTGAAAGAGAAGACACTGAATTTATTTGT
AAGACAATTGGAACCAAGCCAGTTGCTCATATTGACCAATTCACTGCTGACATGCTGGGATCAGCTGAGTTAGCTGAGGA
GGTCAATTTAAATGGTTCTGGCAAACTGCTTAAGATTACAGGCTGTACAAGCCCCGGAAAAACCGTTACAATTGTTGTTC
GTGGATCTAACAAATTGGTGATTGAAGAATGCTCTATTCATGATGCCCTATGTGTTATTCACTGTTTAGTGAAGAAGAGA
GCTCTTATTGCAGGAGGTGGTGCTCCAGAGATAGAACTGACCCTGCGGTTAACTGAATATTCACAAACATTGAGTGGCAT
GGAATCCTACTGCATTCGTGCTTTTGCAGATGCTATGGAAGCCATTCCATCTACGCTAGCTGAAAATGCTGGCCTGAATC
CCATTTCTACAGTAACAGAACTAGGAAACCGACATGCCCAAGGAGAAAAAACTACTGGCATTAATGTCTGAAAGGGTGGT
ATTTCCAACATTTTGGAGGAACTGGTAGTCCAGCCTTTGTTGGTCTCAGTCAGTGCACTGACTCTAGCAACTGAAACTGT
CCAGAGCATTCTGAAAATTGATGATGTGGTAAACACTCAG
ORF - retro_cfam_590 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
93.68 % |
Parental protein coverage: |
96.85 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | GRSKTAYQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPA |
| G..K.....R.KPAQI.FSNISAAKAVADAIRTSLG.KGMDKMIQDGKGDVTITNDGATILKQMQVLHPA |
Retrocopy | GKGKHFKK*RTKPAQICFSNISAAKAVADAIRTSLGAKGMDKMIQDGKGDVTITNDGATILKQMQVLHPA |
|
Parental | ARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVEL |
| ARMLVELSKAQDIEAGDGTT.VV.IAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVEL |
Retrocopy | ARMLVELSKAQDIEAGDGTTPVVFIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVEL |
|
Parental | SDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGL |
| SDRET.LNSATTSLNSKVVSQYSSLLSPMSVNA.MKV.DPATATSVDLR.I.IVKKLGGTIDDCELVEGL |
Retrocopy | SDRETVLNSATTSLNSKVVSQYSSLLSPMSVNAAMKVTDPATATSVDLREIEIVKKLGGTIDDCELVEGL |
|
Parental | VLTQKVANSGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNV |
| VLTQKVANSGITRVEKAKIGLIQFCLSAPK.DMDNQIVVSDYVQMDRVLREERAYILNLVKQI.KTGCNV |
Retrocopy | VLTQKVANSGITRVEKAKIGLIQFCLSAPKMDMDNQIVVSDYVQMDRVLREERAYILNLVKQI*KTGCNV |
|
Parental | LLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNL |
| L.IQKSILRDALSDLALHFLNKMKIMVVKDIERED.EFICKTIGTKPVAHIDQFTADMLGSAELAEEVNL |
Retrocopy | LFIQKSILRDALSDLALHFLNKMKIMVVKDIEREDTEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNL |
|
Parental | NGSGKLLKITGCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLT |
| NGSGKLLKITGCTSPGKTVTIVVRGSNKLVIEE...SIHDALCVI.CLVKKRALIAGGGAPEIEL.LRLT |
Retrocopy | NGSGKLLKITGCTSPGKTVTIVVRGSNKLVIEEC--SIHDALCVIHCLVKKRALIAGGGAPEIELTLRLT |
|
Parental | EYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEEL |
| EYS.TLSGMESYC.RAFADAME.IPSTLAENAGLNPISTVTEL.NRHAQGEKTTGINV.KGGISNILEEL |
Retrocopy | EYSQTLSGMESYCIRAFADAMEAIPSTLAENAGLNPISTVTELGNRHAQGEKTTGINV*KGGISNILEEL |
|
Parental | VVQPLLVSVSALTLATETVRSILKIDDVVNTR |
| VVQPLLVSVSALTLATETV.SILKIDDVVNT. |
Retrocopy | VVQPLLVSVSALTLATETVQSILKIDDVVNTQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012049_cerebellum |
0 .00 RPM |
92 .94 RPM |
SRP017611_brain |
0 .00 RPM |
88 .28 RPM |
SRP017611_kidney |
0 .13 RPM |
136 .90 RPM |
SRP017611_liver |
0 .00 RPM |
83 .97 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_590 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_590 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_590 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
8 parental genes, and
10 retrocopies.