>retro_mmul_2500
GATATGACCATTACATATGATGCTGCCACCATTCTGAAACAAATGTAAGTGTTACATGCAGCAGCCAGAATCCTAGTGGT
GCTGTCTAAGGCTCCAAGATATAGAAGTTGGAGATGGCACCACATCAGTGGTCATTATTGCTGGATCTCTCTTATAGTCC
TATAATAAGCTTCTTCAGAAAGGGATTCATCTAGCCATCATCTCTGAGTCATTCTAGAAGGCTTTGGGAAATGGTATTAA
AGTTGTAACTGACATGTCTTAACCTATGGAAGTAAATGACAAAGAAACATTTTAAAATAGTATAACCAACTTATTGAACT
CAGTGCTTATTTTTCAGTACTCCAGTCTAATTTATCCAATGAATATAGATACAGTGATTAAAGCAAGTGATCTAGCCACA
GCTACCATTGTGTATCTTAGGGATATGAAAGTAGTTAAGTAACTTGGTGGGACAGTTGATTGCAGTGAGTTAGTGAAAGG
GATTATGACCCAAAAGGTGGAAAATTCTGGGATAGCCAGAGTTGAAAAGGCTAAAACTGGGCTTATTCAGTTTTGCTTCT
CTGCTCCCAGAACAGATGGATAATCAAATAGTTTCAGACTTACCCATGTGGAACAAGTGTTGTGAAAAGAAAGAGCCTAA
TACTAAATTTAGTTAAAAAAAAAAAAACTGAAGATAACATCCTGCTCACACAGAAGTCTCTTCTAATTGGTGCTCTTAGT
GATCTTGATTTACGTTTTCTAAACAAAATGAAGATTATGGTGATTAAGGATATTGAAAAATAAGGCATTGAATTTATTTG
TAAGACAACTGGAAACAAGCCAGTTGCTTATATTGACTAATTCACTACTAACATGGTGGGTTCTGCTCCTTTAGCCAAGG
AGGTCAATTTAAATGGTTCTGGCAAATTGCTCAAGACTGCAGGCTATGCACGCCCTGGAAAAGCAGTTATAGTTGTTGTT
CTTCATTCTAATAAACTGATTATTGGAAAGCTAAATGCTCCATTTATGATACCCTATGTTTTATTTCCTGTTTAGTGAAG
AATAGAGTTCTTATTACAAGAGATGGTGCTCCAGAAATCAGAGCTAGCTCTAAAATTACCTGAATATTCATTAACATTGA
GAGGTATGGAATCCTACTGCATTTATGACTTACAGATGATATGGAGGTAACTTCATTTACAGTAGCTAAAAACACTGGCC
TGAATCACATTTCTTCATTAGCAGAACTAGGAAATCAATATGCATAAGAAATAAATACTGTAGGTATTACTGTCCAAAAG
GGTGACATTCTTAACATTTTAGAAGTAATTATTGCCCGACCTCTGTTGGTTTCAATTGGTGCCCTGACTTTAGCAACTGA
AAGTCTCTGAGGCATTCTGAAACTGGATGATATGGTAAACACT
ORF - retro_mmul_2500 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
63.47 % |
Parental protein coverage: |
94.97 % |
Number of stop codons detected: |
11 |
Number of frameshifts detected |
7 |
Retrocopy - Parental Gene Alignment:
Parental | DVTITNDGATILKQMQVLHPAARMLVELSKA-QDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISE |
| D.TIT.D.ATILKQM.VLH.AAR.LV.LSKA.QDIE.GDGTTSVVIIAGSLL.S..KLLQKGIH..IISE |
Retrocopy | DMTITYDAATILKQM*VLHAAARILVVLSKA>QDIEVGDGTTSVVIIAGSLL*SYNKLLQKGIHLAIISE |
|
Parental | SFQKALEKGIEILTDMSRPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDL |
| SF.KAL..GI...TDMS.P.E..D.ET..NS.T..LNS....QYSSL..PM....V.K..D.ATAT.V.L |
Retrocopy | SF*KALGNGIKVVTDMS*PMEVNDKETF*NSITNLLNSVLIFQYSSLIYPMNIDTVIKASDLATATIVYL |
|
Parental | RDIKIVKKLGGTIDDCELVEGLVLTQKVSNSGITRVEKAKIGLIQFCLSA-PKTDMDNQIVVSDY-AQMD |
| RD.K.VK.LGGT.D..ELV.G...TQKV.NSGI.RVEKAK.GLIQFC.SA.P...MDNQIV.SD...... |
Retrocopy | RDMKVVK*LGGTVDCSELVKG-IMTQKVENSGIARVEKAKTGLIQFCFSA>PE-QMDNQIV-SDL<THVE |
|
Parental | RVLREERA-YILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDIEREDIEFICKTIGT |
| .VL..ERA..ILNLV........N.LL.QKS.L..ALSDL.L.FLNKMKIMVIKDIE...IEFICKT.G. |
Retrocopy | QVL*KERA<LILNLVXXXXXED-NILLTQKSLLIGALSDLDLRFLNKMKIMVIKDIEK*GIEFICKTTGN |
|
Parental | KPVAHIDQFTADMLGSAELAEEVSLNGSGKLLKITGCASPGKTVTIVVRGSNKLVIE-EAERSIHDALCV |
| KPVA.ID.FT..M.GSA.LA.EV.LNGSGKLLK..G.A.PGK.V..VV..SNKL.I...A..SI.D.LC. |
Retrocopy | KPVAYID*FTTNMVGSAPLAKEVNLNGSGKLLKTAGYARPGKAVIVVVLHSNKLIIG<KAKCSIYDTLCF |
|
Parental | IRCLVKKRALIAGGGAPEI-ELALRLTEYSRTLSGMESYCVRA-FADAMEVIPSTLAENAGLNPISTVTE |
| I.CLVK.R.LI...GAPEI.ELAL.L.EYS.TL.GMESYC......D.MEV...T.A.N.GLN.IS...E |
Retrocopy | ISCLVKNRVLITRDGAPEI>ELALKLPEYSLTLRGMESYCIYD<LTDDMEVTSFTVAKNTGLNHISSLAE |
|
Parental | LRNRHAQGEKTSGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNT |
| L.N..A....T.GI.V.KG.I.NILE.....PLLVS..ALTLATE....ILK.DD.VNT |
Retrocopy | LGNQYA*EINTVGITVQKGDILNILEVIIARPLLVSIGALTLATESL*GILKLDDMVNT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
88 .74 RPM |
SRP007412_brain_prefrontal_cortex |
0 .08 RPM |
78 .14 RPM |
SRP007412_cerebellum |
0 .13 RPM |
82 .14 RPM |
SRP007412_heart |
0 .00 RPM |
45 .64 RPM |
SRP007412_kidney |
0 .00 RPM |
57 .63 RPM |
SRP007412_liver |
0 .00 RPM |
37 .80 RPM |
SRP007412_testis |
0 .00 RPM |
141 .58 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_2500 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_2500 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_2500 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
8 parental genes, and
10 retrocopies.