Parental gene: | CCT4, ENSCAFG00000003083 |
| Aliases: | None |
| Description: | chaperonin containing TCP1, subunit 4 (delta) [Source:HGNC Symbol;Acc:1617] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 10:61857580..61873913(-) |
>ENSCAFG00000003083
ATGCCCGAGAACGCGGCTCCGCGGAGCGGGGCGCCCGCCGCAGCCGCCGGCGGCCGCAGCAAAACCGCCTACCAGGACCG
CGACAAGCCGGCGCAGATCCGCTTCAGCAACATCTCCGCGGCCAAAGCTGTTGCTGATGCTATTAGAACAAGCCTTGGAC
CAAAAGGAATGGATAAAATGATTCAAGATGGAAAAGGCGATGTGACCATTACAAATGATGGTGCCACCATTCTTAAACAG
ATGCAAGTGTTACATCCAGCAGCCAGAATGCTGGTAGAGCTGTCTAAGGCACAAGATATAGAAGCAGGAGATGGCACCAC
ATCAGTGGTCATCATTGCTGGCTCTCTCTTAGATTCCTGTACCAAGCTTCTTCAGAAAGGGATTCATCCAACCATCATTT
CTGAGTCATTCCAGAAGGCTTTAGAAAAGGGTATAGAAATCTTGACTGACATGTCTCGACCTGTGGAACTGAGTGACAGA
GAAACTTTATTAAATAGTGCTACCACTTCCTTGAACTCAAAGGTTGTGTCTCAGTATTCAAGTCTGCTTTCTCCAATGAG
TGTAAATGCAGTGATGAAAGTTATTGACCCAGCCACGGCTACTAGTGTAGATCTTAGAGACATTAAAATAGTTAAGAAAC
TTGGTGGGACAATTGATGACTGTGAGCTGGTAGAAGGGCTGGTACTTACTCAGAAGGTGGCAAATTCTGGCATAACTAGA
GTTGAAAAGGCTAAGATTGGGCTTATTCAGTTTTGCTTATCTGCTCCCAAAACGGATATGGATAATCAAATTGTAGTTTC
TGACTATGTCCAGATGGATCGAGTGCTTCGGGAGGAGAGAGCCTATATCCTCAATTTAGTGAAGCAAATTAAAAAAACAG
GATGTAATGTCCTCCTCATACAGAAGTCTATCCTGAGAGATGCTCTTAGTGATCTTGCATTACATTTCCTGAACAAGATG
AAGATTATGGTGGTTAAGGATATTGAAAGAGAAGACATTGAATTCATTTGTAAGACAATTGGAACCAAGCCAGTTGCTCA
TATTGACCAATTCACTGCTGATATGCTGGGATCGGCTGAGTTAGCTGAGGAGGTCAATTTAAATGGTTCTGGCAAACTGC
TTAAGATTACAGGCTGTACAAGCCCCGGAAAAACAGTTACAATTGTTGTTCGTGGATCTAACAAATTGGTGATTGAAGAA
GCTGAGCGCTCTATTCATGATGCCCTATGTGTTATTCGCTGTTTAGTGAAGAAGAGAGCTCTTATTGCAGGAGGTGGTGC
TCCAGAGATAGAATTGGCCCTGCGGTTAACTGAATATTCACGAACATTGAGTGGCATGGAATCCTACTGCGTTCGTGCTT
TTGCAGATGCTATGGAAGTCATTCCATCTACACTAGCTGAAAATGCTGGCCTGAATCCCATTTCTACAGTAACAGAACTA
AGAAACCGACATGCCCAAGGAGAAAAAACTACCGGCATAAATGTCCGAAAGGGTGGTATTTCCAACATTTTGGAGGAACT
GGTTGTCCAGCCTTTGTTGGTTTCAGTCAGTGCACTGACTCTAGCAACTGAAACCGTCCGGAGCATTCTGAAAATTGATG
ATGTGGTAAATACTCGGTAA
ATGCCCGAGAACGCGGCTCCGCGGAGCGGGGCGCCCGCCGCAGCCGCCGGCGGCCGCAGCAAAACCGCCTACCAGGACCG
CGACAAGCCGGCGCAGATCCGCTTCAGCAACATCTCCGCGGCCAAAGCTGTTGCTGATGCTATTAGAACAAGCCTTGGAC
CAAAAGGAATGGATAAAATGATTCAAGATGGAAAAGGCGATGTGACCATTACAAATGATGGTGCCACCATTCTTAAACAG
ATGCAAGTGTTACATCCAGCAGCCAGAATGCTGGTAGAGCTGTCTAAGGCACAAGATATAGAAGCAGGAGATGGCACCAC
ATCAGTGGTCATCATTGCTGGCTCTCTCTTAGATTCCTGTACCAAGCTTCTTCAGAAAGGGATTCATCCAACCATCATTT
CTGAGTCATTCCAGAAGGCTTTAGAAAAGGGTATAGAAATCTTGACTGACATGTCTCGACCTGTGGAACTGAGTGACAGA
GAAACTTTATTAAATAGTGCTACCACTTCCTTGAACTCAAAGGTTGTGTCTCAGTATTCAAGTCTGCTTTCTCCAATGAG
TGTAAATGCAGTGATGAAAGTTATTGACCCAGCCACGGCTACTAGTGTAGATCTTAGAGACATTAAAATAGTTAAGAAAC
TTGGTGGGACAATTGATGACTGTGAGCTGGTAGAAGGGCTGGTACTTACTCAGAAGGTGGCAAATTCTGGCATAACTAGA
GTTGAAAAGGCTAAGATTGGGCTTATTCAGTTTTGCTTATCTGCTCCCAAAACGGATATGGATAATCAAATTGTAGTTTC
TGACTATGTCCAGATGGATCGAGTGCTTCGGGAGGAGAGAGCCTATATCCTCAATTTAGTGAAGCAAATTAAAAAAACAG
GATGTAATGTCCTCCTCATACAGAAGTCTATCCTGAGAGATGCTCTTAGTGATCTTGCATTACATTTCCTGAACAAGATG
AAGATTATGGTGGTTAAGGATATTGAAAGAGAAGACATTGAATTCATTTGTAAGACAATTGGAACCAAGCCAGTTGCTCA
TATTGACCAATTCACTGCTGATATGCTGGGATCGGCTGAGTTAGCTGAGGAGGTCAATTTAAATGGTTCTGGCAAACTGC
TTAAGATTACAGGCTGTACAAGCCCCGGAAAAACAGTTACAATTGTTGTTCGTGGATCTAACAAATTGGTGATTGAAGAA
GCTGAGCGCTCTATTCATGATGCCCTATGTGTTATTCGCTGTTTAGTGAAGAAGAGAGCTCTTATTGCAGGAGGTGGTGC
TCCAGAGATAGAATTGGCCCTGCGGTTAACTGAATATTCACGAACATTGAGTGGCATGGAATCCTACTGCGTTCGTGCTT
TTGCAGATGCTATGGAAGTCATTCCATCTACACTAGCTGAAAATGCTGGCCTGAATCCCATTTCTACAGTAACAGAACTA
AGAAACCGACATGCCCAAGGAGAAAAAACTACCGGCATAAATGTCCGAAAGGGTGGTATTTCCAACATTTTGGAGGAACT
GGTTGTCCAGCCTTTGTTGGTTTCAGTCAGTGCACTGACTCTAGCAACTGAAACCGTCCGGAGCATTCTGAAAATTGATG
ATGTGGTAAATACTCGGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 88 .28 RPM |
| SRP017611_kidney | 136 .90 RPM |
| SRP017611_liver | 83 .97 RPM |
| SRP012049_cerebellum | 92 .94 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000008703 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000016982 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000015263 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000013973 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000002882 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000003974 | ortholog_one2one | 2 retrogenes | |
| Sorex araneus | ENSSARG00000010539 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_590 | 93.68 | 96.85 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_2093 | 83.75 | 51.76 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000003083 retrocopies