RetrogeneDB ID: | retro_cfam_886 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 2:13872159..13872897(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000004113 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GDI2 | ||
Ensembl ID: | ENSCAFG00000005223 | ||
Aliases: | GDI2, GDI-2 | ||
Description: | Canis lupus familiaris GDP dissociation inhibitor 2 (GDI2), mRNA. [Source:RefSeq mRNA;Acc:NM_001003184] |
Percent Identity: | 91.53 % |
Parental protein coverage: | 57.21 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | QPCCETINRIKL-YSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEE-IIVQNGKVIG |
.P...T.....L.YSESLARYGKSPYLYPLYGLGELPQGFARLSAI.GGTYMLNKPIE..IIVQNGKVIG | |
Retrocopy | RPSSYTTSKVVL>YSESLARYGKSPYLYPLYGLGELPQGFARLSAIHGGTYMLNKPIEQ<IIVQNGKVIG |
Parental | VKSEGEVARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMI |
VKSEGEVARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNT.DANSCQIIIPQNQVNRKSD.YVCMI | |
Retrocopy | VKSEGEVARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDVYVCMI |
Parental | SSAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDAT |
SSAHNVAAQGKYIA.VSTTVETK.PEKEIRPALELLEPIE.KFVSISD.LVPKDLGTESQIFISRTY.AT | |
Retrocopy | SSAHNVAAQGKYIAVVSTTVETKDPEKEIRPALELLEPIERKFVSISDVLVPKDLGTESQIFISRTYHAT |
Parental | THFETTCDDIKNIYKRMTGSEFDFEEMKRKKNDIYGED |
THFETTCDDIKNIYKRMTGSEFDFEEMKR.KNDIYGED | |
Retrocopy | THFETTCDDIKNIYKRMTGSEFDFEEMKRRKNDIYGED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .92 RPM | 92 .36 RPM |
SRP017611_brain | 0 .08 RPM | 98 .92 RPM |
SRP017611_kidney | 0 .13 RPM | 219 .05 RPM |
SRP017611_liver | 0 .15 RPM | 166 .49 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005316 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000005223 | 2 retrocopies |
retro_cfam_2196, retro_cfam_886 ,
|
Canis familiaris | ENSCAFG00000017406 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020512 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013449 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003623 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021218 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000005367 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006449 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011523 | 1 retrocopy |