RetrogeneDB ID: | retro_chof_1342 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_26832:5950..6309(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BLOC1S6 | ||
Ensembl ID: | ENSCHOG00000012059 | ||
Aliases: | None | ||
Description: | biogenesis of lysosomal organelles complex-1, subunit 6, pallidin [Source:HGNC Symbol;Acc:8549] |
Percent Identity: | 76.86 % |
Parental protein coverage: | 67.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LSHYLPDLQRSKQALQELTQNQVV-LLDTLEQEISKFKECHSMLDINALFTEAKHYHTKLV--IKEMLML |
LSH.LPDLQR..QALQEL.QNQVV..LDTLEQEISKFKECHSMLDI.ALF..AKHYHTKLV...KEMLML | |
Retrocopy | LSHSLPDLQRLTQALQELKQNQVV<ILDTLEQEISKFKECHSMLDIIALFSKAKHYHTKLVNIRKEMLML |
Parental | HEKTSKLKKRALKLQQ----KRQKEELEREQQREKEIEREKQLTAKPAKRT |
H.KTS.L.....K.......KRQKEELEREQQRE.EIE.EKQLTAKPAKRT | |
Retrocopy | H*KTSQLNNNNNKKEHLNLAKRQKEELEREQQREREIEKEKQLTAKPAKRT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012059 | 7 retrocopies |
retro_chof_1342 , retro_chof_20, retro_chof_2054, retro_chof_2102, retro_chof_211, retro_chof_248, retro_chof_600,
|
Dasypus novemcinctus | ENSDNOG00000019785 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000007378 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013892 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012636 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005595 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017628 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017351 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013706 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000007310 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007038 | 1 retrocopy |