Parental gene: | BLOC1S6, ENSDNOG00000019785 |
| Aliases: | None |
| Description: | biogenesis of lysosomal organelles complex-1, subunit 6, pallidin [Source:HGNC Symbol;Acc:8549] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_1371:56658..101083(+) |
>ENSDNOG00000019785
ATGAATGGCCCTGGGCCGCCGCCGCCGGACGGGGTCTTGACGGAGCCCCCTGACGGCCTGGGGACGGGGAAGACGCTGCC
GGGTTTAAATGACACTTCTCCAGATGAAGGGCTAGTAGAGGACTTGACTGTAGAAGACAAAGCTGTGGAGCAACTGGCAG
AAGGACTGCTTTCTCACTATTTGCCGGATCTGCAGAGATCTAAACAAGCCCTCCAGGAACTCACACAGAACCAGGTTGTA
TTATTAGACACACTGAGACAAGAGATTTCAAAATTTAAAGAATGCCATTCTATGGATATNNNNNNNNNNTTCACTGAAGC
TAAACACTATCATACCAAATTGGTGAATATAAGAAAAGAGATGCTGATGCTTCATGAGAAGACATCAAAGTTAAAAATAA
GAGCACTTAAACTGCAGCAGAAGAGGCAGAAAGAAGAGTTGGAAAGGGAGCAGCAACGAGAAAAGGAAATTGAAAGAGAA
AAGCAGTTAAAAAACAAACCAGCTAAAAGGACATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 26 .84 RPM |
| SRP012922_cerebellum | 7 .70 RPM |
| SRP012922_heart | 4 .41 RPM |
| SRP012922_kidney | 4 .38 RPM |
| SRP012922_liver | 4 .80 RPM |
| SRP012922_lung | 16 .04 RPM |
| SRP012922_quadricep_muscle | 5 .02 RPM |
| SRP012922_spleen | 17 .51 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000012059 | ortholog_one2one | 7 retrogenes | |
| Echinops telfairi | ENSETEG00000007378 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000013892 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000012636 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000005595 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000017628 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000017351 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000013706 | ortholog_one2many | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000007310 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000007038 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_275 | 75.53 | 53.80 | Please wait, loading  |
Please wait, loading |
Please wait, loading |
| 2. | retro_dnov_1687 | 70.79 | 51.46 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 3. | retro_dnov_1885 | 61.86 | 54.97 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 4. | retro_dnov_2009 | 70.79 | 51.46 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 5. | retro_dnov_2411 | 51.49 | 58.48 | Please wait, loading |
Please wait, loading |
Please wait, loading |
Download FASTA sequences of all ENSDNOG00000019785 retrocopies