RetrogeneDB ID: | retro_chof_1588 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_332678:502..1154(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPCS2 | ||
Ensembl ID: | ENSCHOG00000002974 | ||
Aliases: | None | ||
Description: | signal peptidase complex subunit 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28962] |
Percent Identity: | 90.91 % |
Parental protein coverage: | 99.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAAAVAQGGRCGGGGGGGGGTGGGSSSGTGSSRSGLLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKK-VL |
MA...AQGGRCGGGGGGGG.TGGGSSSGTGSS.SGLLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKK.VL | |
Retrocopy | MASVAAQGGRCGGGGGGGG-TGGGSSSGTGSSHSGLLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKK>VL |
Parental | LEKYKYVENFGLIDGRLTICTISC-FFAIVALIWDYMHPFPESKPVLALCVISSYFVMMGILTIYTSYKE |
LEKYKYVENFGLIDGRLTICTISC...AIV.LIWDYMHPFPESKPVLALCVI..YF.MMGILTIYTSY.E | |
Retrocopy | LEKYKYVENFGLIDGRLTICTISCXXXAIVTLIWDYMHPFPESKPVLALCVI-LYFIMMGILTIYTSYLE |
Parental | KSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRSKQQREAEFTKSIAKFFDHSGTLVMD |
KSIFLV.HRKDPTGMDPDD..QLSSSLKRFDDKYTLKLTFISGR.K.QREAEFTKSIAKFFDHSGTLVMD | |
Retrocopy | KSIFLVVHRKDPTGMDPDDV*QLSSSLKRFDDKYTLKLTFISGRTK*QREAEFTKSIAKFFDHSGTLVMD |
Parental | AYEPEISRLH |
AYEPEISR.H | |
Retrocopy | AYEPEISRPH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |