RetrogeneDB ID: | retro_mmus_2088 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:129378273..129378684(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081888 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Spcs2 | ||
Ensembl ID: | ENSMUSG00000035227 | ||
Aliases: | Spcs2, 5730406I15Rik, AA408713, mKIAA0102 | ||
Description: | signal peptidase complex subunit 2 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913874] |
Percent Identity: | 94.16 % |
Parental protein coverage: | 60.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | ISCFFAIVALIWDYMHPFPESKPVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQL |
ISCFFAIVALIWDYMHPF..SKPVLALCVISYFVMMGILTIYTSYKEKSIFL.AHRKDPTGM.PDDIWQL | |
Retrocopy | ISCFFAIVALIWDYMHPFS*SKPVLALCVISYFVMMGILTIYTSYKEKSIFLTAHRKDPTGMSPDDIWQL |
Parental | SSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLATERKIK |
SSSLKRFDDK.TLKLTFI.GRTKQQREA.FTKSIAKFFDHSGTLVM.AYEPEISRLHDSLATERKIK | |
Retrocopy | SSSLKRFDDKNTLKLTFIGGRTKQQREAKFTKSIAKFFDHSGTLVMNAYEPEISRLHDSLATERKIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 51 .12 RPM |
SRP007412_cerebellum | 0 .00 RPM | 51 .41 RPM |
SRP007412_heart | 0 .03 RPM | 31 .29 RPM |
SRP007412_kidney | 0 .04 RPM | 52 .15 RPM |
SRP007412_liver | 0 .00 RPM | 65 .68 RPM |
SRP007412_testis | 0 .05 RPM | 91 .66 RPM |