RetrogeneDB ID: | retro_pabe_2619 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:776904..777249(+) | ||
Located in intron of: | ENSPPYG00000015307 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPCS2 | ||
Ensembl ID: | ENSPPYG00000003682 | ||
Aliases: | None | ||
Description: | Signal peptidase complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5RAY6] |
Percent Identity: | 73.73 % |
Parental protein coverage: | 51.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAAAAAQGG-RSGGIGGCIGAGGASNCGTGSGRSGLLDKWKIDDKPVKIDKWDGSAVKNS-LDDSAKKVL |
MAAAAA..G.R.GG..G..GAGG.S.C.TGSGRSG.L.KWKI.D.PVK.DKWDGSAVKNS..D...K..L | |
Retrocopy | MAAAAARAG<RRGGSAGGGGAGGGSSCRTGSGRSGMLHKWKIGDMPVKTDKWDGSAVKNS>DDSAKKILL |
Parental | LEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLAL |
.EKY.YVENF..IDG.LTICT.SC.FAIVA.IWDYMHPFPESKPVLAL | |
Retrocopy | -EKYIYVENFYVIDGHLTICTMSCCFAIVAVIWDYMHPFPESKPVLAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 33 .23 RPM |
SRP007412_cerebellum | 0 .12 RPM | 37 .45 RPM |
SRP007412_heart | 0 .03 RPM | 28 .84 RPM |
SRP007412_kidney | 0 .00 RPM | 39 .54 RPM |
SRP007412_liver | 0 .00 RPM | 57 .56 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3137 |