RetrogeneDB ID: | retro_cpor_438 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_151:608354..608811(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPCS2 | ||
Ensembl ID: | ENSCPOG00000007273 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 55.13 % |
Parental protein coverage: | 68.14 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | LDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMH |
LD....D...V..DKW.GSAV..SL.DSA..VLLEK.K....F.L....LT.C..SC.FA.VAL.WDY.. | |
Retrocopy | LDM*MTDGDSVGTDKWGGSAVNSSLEDSAVNVLLEKCKHKVSFDLRVRHLTLCPLSCLFATVALVWDYTL |
Parental | PFPESKPVLALCVVSYFVMMGILTIYTSYKEKSIFLVAH-RKDPTGMDPD-DIWQLSSSLKRFDDKYTLK |
PF...KPV.A...VS..V.MGI.T...S.KE.SIFLVAH..KDPTGMDP..D..QL.S.LKR...KYTLK | |
Retrocopy | PFADCKPVWAQGIVS*LVRMGIQTLSPSCKE-SIFLVAH<LKDPTGMDPG<DR*QLTSCLKRSSNKYTLK |
Parental | LTFISGRTKQQREAEF |
LTF...R.K.Q..... | |
Retrocopy | LTFARERIKKQPKLQY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 29 .73 RPM |
SRP017611_liver | 0 .00 RPM | 45 .57 RPM |
SRP040447_lung | 0 .00 RPM | 37 .48 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 15 .09 RPM |