RetrogeneDB ID: | retro_chof_1939 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_42720:4049..4549(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CENPH | ||
Ensembl ID: | ENSCHOG00000011338 | ||
Aliases: | None | ||
Description: | centromere protein H [Source:HGNC Symbol;Acc:17268] |
Percent Identity: | 75.15 % |
Parental protein coverage: | 68.02 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | AKIEDLE-NEIEESKIAFEMTSLALHRMQLSSALKRNLEKTDTKTSLLMDNMKHVLKLNKLIMKSQQKSW |
AK..DLE..E...SK.AFE..SLAL..MQLSSALKRNLE.TDTKTSLLMD.MKHVLKLNKLIMKSQQKS. | |
Retrocopy | AKLSDLE<DELK-SKNAFEI*SLALNSMQLSSALKRNLEETDTKTSLLMDDMKHVLKLNKLIMKSQQKSR |
Parental | DLEEKLLDVRKKRLQLKQASESKLLEIQTEKNKQKDDLDSMENSDKIKTIQQXXXXXXXXXXXXXXXXXN |
D.EEKLLDVRK.RLQLK.ASESKLLEIQ.EKNKQKDDLDSMENSDKIKTI.Q.................N | |
Retrocopy | DFEEKLLDVRKTRLQLK*ASESKLLEIQIEKNKQKDDLDSMENSDKIKTI*QNLQVEI*IITVTQHVFQN |
Parental | LILGSKVNWAEDSALKETVLQLEKNLSMI |
LILGS.V.WAED.AL.ETVLQLE.NLSMI | |
Retrocopy | LILGSEVHWAEDCALEETVLQLERNLSMI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000007717 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011338 | 2 retrocopies |
retro_chof_1939 , retro_chof_982,
|
Monodelphis domestica | ENSMODG00000025601 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014646 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000007822 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000011867 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002098 | 1 retrocopy |