RetrogeneDB ID: | retro_shar_807 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL865007.1:122118..122644(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CENPH | ||
Ensembl ID: | ENSSHAG00000007822 | ||
Aliases: | None | ||
Description: | centromere protein H [Source:HGNC Symbol;Acc:17268] |
Percent Identity: | 65.92 % |
Parental protein coverage: | 85.1 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MVRQLLRLKNQIKQQLLEYKAEVEASKMSPTEECTEDNLIQ-KIEDLERKMEDMKIELEAKTLALKRIQV |
MVRQLLR.K..IK.QLL..K...EASK.SP..EC..D..IQ.K.E.L.RKME.MK.EL.AK.LAL.RI.V | |
Retrocopy | MVRQLLRMKKRIKGQLLD*KEGGEASKVSPAGECAADGGIQ<KLESLKRKMEGMKTELGAKPLALQRIRV |
Parental | AHALEKKLEKKDADFEPILAIMKNILTVNGSIL-KAQQLTRDLEEKMLEVKKKRLMFKKAGEEKVLEIKA |
.HALEKKL.K.D.DFE.ILAIMKNIL.VNGSIL...QQL.RDLEEKMLEV.KKRLMFKK....K.LE.K. | |
Retrocopy | THALEKKLGKGDGDFELILAIMKNILSVNGSIL<EPQQLIRDLEEKMLEV-KKRLMFKKTWRKKGLEMKL |
Parental | EKKRKKDESSLLNNSPLIIKMKKNLQKEIDTTVIIQNVF |
..K.KK.E.SLL.NSPL.IKMK.NL.K.IDT.......F | |
Retrocopy | RIKAKKGELSLLSNSPLVIKMKENLHKQIDTQLSFFQMF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000007717 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011338 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000025601 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014646 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000007822 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000011867 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002098 | 1 retrocopy |