RetrogeneDB ID: | retro_mputfur_240 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896899.1:7239521..7239915(-) | ||
Located in intron of: | ENSMPUG00000016871 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CENPH | ||
Ensembl ID: | ENSMPUG00000014646 | ||
Aliases: | None | ||
Description: | centromere protein H [Source:HGNC Symbol;Acc:17268] |
Percent Identity: | 68.15 % |
Parental protein coverage: | 54.25 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | QPGKQAATEPADSGAGGGEGEPPQVAGAQAARPEDRLTLLLRLRAQTKQQLLEYKSMVDATEEKSPEQIL |
QP.K.AA..P.DSG.GGGEG.P.QV.......P.D..TLLLRLRAQ.K..LL.YKS.VDA.EEK..EQI. | |
Retrocopy | QPKK*AAAKPSDSGVGGGEGGPAQV-WCPGVHPKDHFTLLLRLRAQGK**LLDYKSVVDANEEKALEQIV |
Parental | QDKQVEAKIEDLENEIEEVKIAFEMKK-LALDRMQLSTALKKNLEKNNPRTSVLMDNMKHILKLN |
QDKQ.EAKIEDLE.E.EE.KIAFEMKK.L.LDRMQL..ALKK...K..P..SVLMDNMKH.LKLN | |
Retrocopy | QDKQIEAKIEDLEREPEELKIAFEMKK>LVLDRMQL*AALKKTWRKLTP--SVLMDNMKHVLKLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000007717 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011338 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000025601 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014646 | 1 retrocopy |
retro_mputfur_240 ,
|
Sarcophilus harrisii | ENSSHAG00000007822 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000011867 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002098 | 1 retrocopy |