RetrogeneDB ID: | retro_shar_806 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL864961.1:54674..55042(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CENPH | ||
Ensembl ID: | ENSSHAG00000007822 | ||
Aliases: | None | ||
Description: | centromere protein H [Source:HGNC Symbol;Acc:17268] |
Percent Identity: | 65.62 % |
Parental protein coverage: | 59.62 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MVRQLLRLKNQIKQQLLEYKA-EVEASKMSPTEECTEDNLIQKIEDLERKME-DMKIE-LEAKTLALKRI |
MVRQLLR.K..IK.QL...KA...E.SK.SP..EC.....IQ..EDLERK.E..MKI..LEAK.L.L.RI | |
Retrocopy | MVRQLLRMKKRIKGQLRD*KA<RGETSKVSPAGECAAGGGIQRLEDLERK*E<EMKIS<LEAKPLPLQRI |
Parental | QVAHALEKKLEKKDADFEPILAIMKNILTVNGSILK-AQQLTRDLEEKMLEVKKKRLM |
.V..ALEKKL.K.D.DFEP.LAIM.NI.TVNGSILK..QQ.T.D.EEK.LEVKKKRLM | |
Retrocopy | RVTPALEKKLGKGDGDFEPMLAIMNNIFTVNGSILK<TQQVTLDMEEKVLEVKKKRLM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000007717 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011338 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000025601 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014646 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000007822 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000011867 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002098 | 1 retrocopy |