RetrogeneDB ID: | retro_chof_2287 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_6339:21775..23122(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1B2 | ||
Ensembl ID: | ENSCHOG00000003668 | ||
Aliases: | None | ||
Description: | ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 [Source:HGNC Symbol;Acc:854] |
Percent Identity: | 98. % |
Parental protein coverage: | 87.84 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVF |
.KFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRT.VSEDMLGRVF | |
Retrocopy | IKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTLVSEDMLGRVF |
Parental | NGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEI |
NGSGKPIDRGPVVLA.DFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEI | |
Retrocopy | NGSGKPIDRGPVVLAKDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEI |
Parental | A-QICRQAGLVKKSKDVVEYSEENFAIVFADMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERI |
A.QICRQAGLVKKSKDVV.YSEENFAIVFA.MGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERI | |
Retrocopy | AAQICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERI |
Parental | ITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVE |
ITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGR.GFPGYMYTDLATIYERAGRVE | |
Retrocopy | ITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGR*GFPGYMYTDLATIYERAGRVE |
Parental | GRNGSITQMPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTR |
GRNGSITQMPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLS.LMKSAIGEGMTR | |
Retrocopy | GRNGSITQMPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSQLMKSAIGEGMTR |
Parental | KDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKFERNFIAQGPYENRTVYETLDIGWQ |
KDHADVSNQLYACYAIGKDVQAMKAVV.EEALTSDDLLYLEFLQKFERNFIAQGPYENRTVYETLDIGWQ | |
Retrocopy | KDHADVSNQLYACYAIGKDVQAMKAVVREEALTSDDLLYLEFLQKFERNFIAQGPYENRTVYETLDIGWQ |
Parental | LLRIFPKEMLKRIPQSTLSEFYPRDSAKH |
LLRIFPKEMLKRIPQSTLSEFYPRDSAKH | |
Retrocopy | LLRIFPKEMLKRIPQSTLSEFYPRDSAKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003668 | 1 retrocopy |
retro_chof_2287 ,
|
Homo sapiens | ENSG00000147416 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003888 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001791 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000794 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000020040 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010477 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000013650 | 1 retrocopy |